MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-506-P2b3

Family name MIR-506 (all species)
Seed GAUUGGC
Species Horse (Equus caballus)
MiRBase ID eca-mir-507a
Paralogues Eca-Mir-506-P1m  Eca-Mir-506-P1n  Eca-Mir-506-P1o-v1  Eca-Mir-506-P1o-v2  Eca-Mir-506-P1o-v3  Eca-Mir-506-P1p-v1  Eca-Mir-506-P1p-v2  Eca-Mir-506-P1p-v3  Eca-Mir-506-P2a  Eca-Mir-506-P2b4  Eca-Mir-506-P3  Eca-Mir-506-P4a  Eca-Mir-506-P4b  Eca-Mir-506-P28a  Eca-Mir-506-P28b  Eca-Mir-506-P28c-v1  Eca-Mir-506-P28c-v2  Eca-Mir-506-P28d1  Eca-Mir-506-P28d2  Eca-Mir-506-P28e1  Eca-Mir-506-P28e2  Eca-Mir-506-P28f1  Eca-Mir-506-P28f2  Eca-Mir-506-P28f3  Eca-Mir-506-P29a1  Eca-Mir-506-P29a2  Eca-Mir-506-P29b  Eca-Mir-506-P30a  Eca-Mir-506-P30b1-v1  Eca-Mir-506-P30b1-v2  Eca-Mir-506-P30b2-v1  Eca-Mir-506-P30b2-v2  Eca-Mir-506-P30c1  Eca-Mir-506-P30c2  Eca-Mir-506-P30d  Eca-Mir-506-P31a  Eca-Mir-506-P31b  Eca-Mir-506-P31c  Eca-Mir-506-P32  Eca-Mir-506-P33a  Eca-Mir-506-P33b1  Eca-Mir-506-P33b2  Eca-Mir-506-P34  Eca-Mir-506-P35a-v1  Eca-Mir-506-P35a-v2  Eca-Mir-506-P35b1-v1  Eca-Mir-506-P35b1-v2  Eca-Mir-506-P35b2-v1  Eca-Mir-506-P35b2-v2  Eca-Mir-506-P35c-v1  Eca-Mir-506-P35c-v2 
Orthologues Cfa-Mir-506-P2b  Cpo-Mir-506-P2b  Dno-Mir-506-P2b  Hsa-Mir-506-P2b  Laf-Mir-506  Mml-Mir-506-P2b  Mmr-Mir-506-P2b  Mmu-Mir-506-P2b  Pab-Mir-506-P2b  Rno-Mir-506-P2b 
Node of Origin (locus) E. caballus
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009179.1: 120853655-120853712 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P2b3)		 Mir-506-P1p-v2 CM009179.1: 120848454-120848514 [-] UCSC Ensembl
Mir-506-P1p-v1 CM009179.1: 120848454-120848514 [-] UCSC Ensembl
Mir-506-P1p-v3 CM009179.1: 120848456-120848512 [-] UCSC Ensembl
Mir-506-P4a CM009179.1: 120853343-120853400 [-] UCSC Ensembl
Mir-506-P2b3 CM009179.1: 120853655-120853712 [-] UCSC Ensembl
Mir-506-P3 CM009179.1: 120863542-120863599 [-] UCSC Ensembl
Mir-506-P2a CM009179.1: 120869779-120869836 [-] UCSC Ensembl
Mir-506-P1o-v2 CM009179.1: 120880989-120881048 [-] UCSC Ensembl
Mir-506-P1o-v1 CM009179.1: 120880989-120881048 [-] UCSC Ensembl
Mir-506-P1o-v3 CM009179.1: 120880991-120881047 [-] UCSC Ensembl
Mir-506-P1n CM009179.1: 120886562-120886618 [-] UCSC Ensembl
Mir-506-P2b4 CM009179.1: 120897861-120897918 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACCUUCAGCCAUGUUGUGUGCAGUGCUUCACUUCAGGAAGUGCCAUCCAUGUGGCUAGAAAUAUGAUUGGCACCUCUUAGAGUGAAGUAAUGCACAACAGGUACAUCAGUGCUGGC
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Structure
        10          20        30        40        50        
CCACCUUCAGCCAUGUUG--|     G         UC    A      UC    UGGC 
                    UGUGCA UGCUUCACU  AGGA GUGCCA  CAUG    U
                    ACACGU AUGAAGUGA  UUCU CACGGU  GUAU    A
CGGUCGUGACUACAUGGACA^     A         GA    C      UA    AAAG 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er
Star sequence

Eca-Mir-506-P2b3_5p*
mirBase accessionNone
Sequence 
0- CACUUCAGGAAGUGCCAUCCAUG -23
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Mature sequence

Eca-Mir-506-P2b3_3p
mirBase accessionMIMAT0013230
Sequence 
35- UGAUUGGCACCUCUUAGAGUGAA -58
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