Mir-506-P1o-v3

MirGeneDB ID

Eca-Mir-506-P1o-v3

Family name

MIR-506 (all species)

Seed

GAUUGAC

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-509b

Paralogues

Eca-Mir-506-P1m Eca-Mir-506-P1n Eca-Mir-506-P1o-v1 Eca-Mir-506-P1o-v2 Eca-Mir-506-P1p-v1 Eca-Mir-506-P1p-v2 Eca-Mir-506-P1p-v3 Eca-Mir-506-P2a Eca-Mir-506-P2b3 Eca-Mir-506-P2b4 Eca-Mir-506-P3 Eca-Mir-506-P4a Eca-Mir-506-P4b Eca-Mir-506-P28a Eca-Mir-506-P28b Eca-Mir-506-P28c-v1 Eca-Mir-506-P28c-v2 Eca-Mir-506-P28d1 Eca-Mir-506-P28d2 Eca-Mir-506-P28e1 Eca-Mir-506-P28e2 Eca-Mir-506-P28f1 Eca-Mir-506-P28f2 Eca-Mir-506-P28f3 Eca-Mir-506-P29a1 Eca-Mir-506-P29a2 Eca-Mir-506-P29b Eca-Mir-506-P30a Eca-Mir-506-P30b1-v1 Eca-Mir-506-P30b1-v2 Eca-Mir-506-P30b2-v1 Eca-Mir-506-P30b2-v2 Eca-Mir-506-P30c1 Eca-Mir-506-P30c2 Eca-Mir-506-P30d Eca-Mir-506-P31a Eca-Mir-506-P31b Eca-Mir-506-P31c Eca-Mir-506-P32 Eca-Mir-506-P33a Eca-Mir-506-P33b1 Eca-Mir-506-P33b2 Eca-Mir-506-P34 Eca-Mir-506-P35a-v1 Eca-Mir-506-P35a-v2 Eca-Mir-506-P35b1-v1 Eca-Mir-506-P35b1-v2 Eca-Mir-506-P35b2-v1 Eca-Mir-506-P35b2-v2 Eca-Mir-506-P35c-v1 Eca-Mir-506-P35c-v2

Orthologues

Cfa-Mir-506-P1 Laf-Mir-506 Mmr-Mir-506-P1o1 Mmr-Mir-506-P1o2 Rno-Mir-506-P1

Node of Origin (locus)

E. caballus

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 120880991-120881047 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P1o-v3)

Mir-506-P1p-v2 CM009179.1: 120848454-120848514 [-] UCSC Ensembl
Mir-506-P1p-v1 CM009179.1: 120848454-120848514 [-] UCSC Ensembl
Mir-506-P1p-v3 CM009179.1: 120848456-120848512 [-] UCSC Ensembl
Mir-506-P4b CM009179.1: 120853343-120853400 [-] UCSC Ensembl
Mir-506-P2b3 CM009179.1: 120853655-120853712 [-] UCSC Ensembl
Mir-506-P3 CM009179.1: 120863542-120863599 [-] UCSC Ensembl
Mir-506-P2a CM009179.1: 120869779-120869836 [-] UCSC Ensembl
Mir-506-P1o-v2 CM009179.1: 120880989-120881048 [-] UCSC Ensembl
Mir-506-P1o-v1 CM009179.1: 120880989-120881048 [-] UCSC Ensembl
Mir-506-P1o-v3 CM009179.1: 120880991-120881047 [-] UCSC Ensembl
Mir-506-P1n CM009179.1: 120886562-120886618 [-] UCSC Ensembl
Mir-506-P2b4 CM009179.1: 120897861-120897918 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAUCCUUAGACAUUCGUUGUGUGGUACUCUACUCCAAAGAGUGGCAAUCAUGUGUAAUUAGAUGUGAUUGACACCUCUGUGAGUGGAGUAACAUGUGACACAUGCGGCACAGGUGAU

Get precursor sequence

Structure

        10           20        30         40        50       
CAUCCUUAGACAUUCGUU--- UG  G          -| A  A   G       GUGUA 
                     G  UG UACUCUACUC CA AG GUG CAAUCAU     A
                     U  AC AUGAGGUGAG GU UC CAC GUUAGUG     U
UAGUGGACACGGCGUACACAG GU  A          U^ C  -   A       UAGAU 
     110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-506-P1o-v3_5p*

mirBase accession

MIMAT0034709

Sequence

0- ACUCCAAAGAGUGGCAAUCAUG -22

Get sequence

Mature sequence

Eca-Mir-506-P1o-v3_3p

mirBase accession

None

Sequence

34- UGAUUGACACCUCUGUGAGUGGA -57

Get sequence