MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-506-P1h

Family name MIR-506 (all species)
Seed ACUCAAG
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-509c
Paralogues Ocu-Mir-506-P1f  Ocu-Mir-506-P1g  Ocu-Mir-506-P2a  Ocu-Mir-506-P3  Ocu-Mir-506-P4  Ocu-Mir-506-P5 
Orthologues Cfa-Mir-506-P1  Laf-Mir-506  Rno-Mir-506-P1 
Node of Origin (locus) O. cuniculus
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)		 chrUn0002: 10687771-10687828 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P1h)		 Mir-506-P5 chrUn0002: 10678464-10678522 [-] UCSC Ensembl
Mir-506-P1h chrUn0002: 10687771-10687828 [-] UCSC Ensembl
Mir-506-P4 chrUn0002: 10694554-10694611 [-] UCSC Ensembl
Mir-506-P3 chrUn0002: 10705716-10705773 [-] UCSC Ensembl
Mir-506-P2a chrUn0002: 10707176-10707233 [-] UCSC Ensembl
Mir-506-P1g chrUn0002: 10711587-10711644 [-] UCSC Ensembl
Mir-506-P1f chrUn0002: 10723771-10723827 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAUCCCUGGAUACACUGUGUGCUGUGCUCUACUCAAGACAGUGGCAAUCAUGUAUAAUUAAAUAUGAUUGACACGUCUAUGAGUGGAAUAAGGCAUGACACAUACUACGUAAGUGAU
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Structure
        10          20        30         40        50        
CCAUCCCUGGAUACACU-  -     G  C        -|   A   G        UAUA 
                  GU GUGCU UG UCUACUCA AGAC GUG CAAUCAUG    A
                  CA UACGG AU AGGUGAGU UCUG CAC GUUAGUAU    U
UAGUGAAUGCAUCAUACA  G     A  A        A^   -   A        AAAU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
He Ki Te To Wh
Mature sequence

Ocu-Mir-506-P1h_5p
mirBase accessionMIMAT0048517
Sequence 
0- UACUCAAGACAGUGGCAAUCAUG -23
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Star sequence

Ocu-Mir-506-P1h_3p* (predicted)
mirBase accessionMIMAT0048518
Sequence 
35- UGAUUGACACGUCUAUGAGUGGA -58
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