MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-506-P2a

Family name MIR-506 (all species)
Seed UUGGCAC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-507
Paralogues Ocu-Mir-506-P1f  Ocu-Mir-506-P1g  Ocu-Mir-506-P1h  Ocu-Mir-506-P3  Ocu-Mir-506-P4  Ocu-Mir-506-P5 
Orthologues Bta-Mir-506-P2a  Cfa-Mir-506-P2a  Cja-Mir-506-P2a  Cpo-Mir-506-P2a1  Cpo-Mir-506-P2a2  Eca-Mir-506-P2a  Laf-Mir-506  Mmr-Mir-506-P2a 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)		 chrUn0002: 10707176-10707233 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P2a)		 Mir-506-P5 chrUn0002: 10678464-10678522 [-] UCSC Ensembl
Mir-506-P1h chrUn0002: 10687771-10687828 [-] UCSC Ensembl
Mir-506-P4 chrUn0002: 10694554-10694611 [-] UCSC Ensembl
Mir-506-P3 chrUn0002: 10705716-10705773 [-] UCSC Ensembl
Mir-506-P2a chrUn0002: 10707176-10707233 [-] UCSC Ensembl
Mir-506-P1g chrUn0002: 10711587-10711644 [-] UCSC Ensembl
Mir-506-P1f chrUn0002: 10723771-10723827 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACGUUUUGCUUUAUUUUGUGCAGUGCUCCACUCCAAAGGGCGCCAUUCAGGUACACCAAAUUAUGAUUGGCACUUUUUUGAGUGUGGUAAUUCACAACAUGUACAACUACAUAUGU
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Structure
        10          20        30        40        50        
CCACGUUUUGCUUUAUU--|    CAG   UC     C      C    U   GGUACA 
                   UUGUG   UGC  CACUC AAAGGG GCCA UCA      C
                   AACAC   AUG  GUGAG UUUUUC CGGU AGU      C
UGUAUACAUCAACAUGUAC^    UUA   GU     U      A    U   AUUAAA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
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Star sequence

Ocu-Mir-506-P2a_5p* (predicted)
mirBase accessionMIMAT0048507
Sequence 
0- CACUCCAAAGGGCGCCAUUCA -21
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Mature sequence

Ocu-Mir-506-P2a_3p (predicted)
mirBase accessionMIMAT0048508
Sequence 
37- AUUGGCACUUUUUUGAGUGUG -58
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