| MirGeneDB ID | Cfa-Mir-506-P4b |
|---|---|
| Family name | MIR-506 (all species) |
| Seed | GAAUGGC |
| Species | Dog (Canis familiaris) |
| MiRBase ID | cfa-mir-506 |
| Paralogues | Cfa-Mir-506-P1 Cfa-Mir-506-P2a Cfa-Mir-506-P2b Cfa-Mir-506-P3a Cfa-Mir-506-P3b |
| Orthologues | Bta-Mir-506-P4b Cja-Mir-506-P4 Cpo-Mir-506-P4 Dno-Mir-506-P4 Eca-Mir-506-P4b Hsa-Mir-506-P4 Laf-Mir-506 Mml-Mir-506-P4 Mmr-Mir-506-P4 Mmu-Mir-506-P4 Ocu-Mir-506-P4 Pab-Mir-506-P4 Rno-Mir-506-P4 |
| Node of Origin (locus) | Scrotifera |
| Node of Origin (family) | Eutheria |
| Genome context (canFam3_add) |
chrX: 115652425-115652482 [-] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-506-P4b) |
Mir-506-P4b
chrX: 115652425-115652482 [-]
UCSC
Ensembl
Mir-506-P2b chrX: 115652721-115652779 [-] UCSC Ensembl Mir-506-P3b chrX: 115658398-115658456 [-] UCSC Ensembl Mir-506-P3a chrX: 115658609-115658666 [-] UCSC Ensembl Mir-506-P2a chrX: 115665393-115665450 [-] UCSC Ensembl Mir-506-P1 chrX: 115688019-115688076 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CUGCCUUCGGCUUAUCUGUGUUCAGUGCCCUACUCAGGGAGGCGUCAUUCACAUAAGUUGAUAUAUGAAUGGCACCUUUUUGAGUAGGGUAAUGUACAAUGAGGACAACAUUUGUGGUGet precursor sequence |
| Structure | 10 20 30 40 50 CUGCCUUCGGCUUAUCUG--| U G C CAUAAG UGU CA UGCCCUACUCAGGGAGG GUCAUUCA U ACA GU AUGGGAUGAGUUUUUCC CGGUAAGU U UGGUGUUUACAACAGGAGUA^ U A A AUAUAG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Cfa-Mir-506-P4b_5p* |
| mirBase accession | MIMAT0034422 |
| Sequence |
0- UACUCAGGGAGGCGUCAUUCACA -23
Get sequence
|
| Proposed targets |
TargetScanVert: cfa-miR-506 miRDB: MIMAT0034422 |
| Mature sequence | Cfa-Mir-506-P4b_3p |
| mirBase accession | None |
| Sequence |
35- UGAAUGGCACCUUUUUGAGUAGG -58
Get sequence
|
