MirGeneDB 3.0

MirGeneDB ID

Pma-Mir-26-o3

Family name MIR-26 (all species)
Seed UCAAGUA
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-26b
Paralogues Pma-Mir-26-o1  Pma-Mir-26-o2  Pma-Mir-26-o4 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046102.1: 6813097-6813157 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGAGUACUGGCAUCCUGGCCGUGGCCUGAUUCAAGUAAUCCAGGAUAGGUUGGUUUAUUACCAGAGAGCCUAUCCUCGACUACUUGGGUUAGGAGGCGGCGGAUGACGCCACGAGACCUC
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Structure
        10          20        30        40        50          
CCGAGUACUGGCAUCCUG--|    GG             A  C          GGUUUAU 
                    GCCGU  CCUGAUUCAAGUA UC AGGAUAGGUU       \
                    CGGCG  GGAUUGGGUUCAU AG UCCUAUCCGA       U
CUCCAGAGCACCGCAGUAGG^    GA             C  C          GAGACCA 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-26-o3_5p

mirBase accessionMIMAT0019411
Sequence
0- UUCAAGUAAUCCAGGAUAGGUU -22
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Star sequence

Pma-Mir-26-o3_3p*

mirBase accessionMIMAT0019412
Sequence
39- CCUAUCCUCGACUACUUGGGUU -61
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