MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-26-o4

Family name MIR-26 (all species)
Seed UCAAGUA
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues Pma-Mir-26-o1  Pma-Mir-26-o2  Pma-Mir-26-o3 
Orthologues Aca-Mir-26-P4  Ami-Mir-26-P4  Bta-Mir-26-P4  Cfa-Mir-26-P4  Cja-Mir-26-P4  Cpi-Mir-26-P4  Cpo-Mir-26-P4  Dno-Mir-26-P4  Dre-Mir-26-P4  Eca-Mir-26-P4  Ete-Mir-26-P4  Gga-Mir-26-P4  Gja-Mir-26-P4  Gmo-Mir-26-P4  Hsa-Mir-26-P4  Laf-Mir-26-P4  Lch-Mir-26-P4  Loc-Mir-26-P4  Mal-Mir-26-P4  Mdo-Mir-26-P4  Mml-Mir-26-P4  Mmr-Mir-26-P4  Mmu-Mir-26-P4  Mun-Mir-26-P4  Neu-Mir-26-P4  Oan-Mir-26-P4  Ocu-Mir-26-P4  Pab-Mir-26-P4  Pbv-Mir-26-P4  Rno-Mir-26-P4  Sha-Mir-26-P4  Spt-Mir-26-P4  Sto-Mir-26-P4  Tgu-Mir-26-P4  Tni-Mir-26-P4  Xla-Mir-26-P4a  Xla-Mir-26-P4b  Xtr-Mir-26-P4 
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046078.1: 15629166-15629223 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGCUGCCGUACCCCCUGGCCCGCCCCUGGUUCAAGUAAUCCAGGAUAGGCUGUGGGCUGAGCCGGCCUGUCCUCGGUUGCUUGGCCUUGGUGCGGUGCCACCAUCGGCCACCAUCGG
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Structure
        10         20          30        40        50        
AAGCUGCCGUACCCCCU-   -    -| CU   U         C          GUGGG 
                  GGC CCGC CC  GGU CAAGUAAUC AGGAUAGGCU     C
                  CCG GGCG GG  CCG GUUCGUUGG UCCUGUCCGG     U
GGCUACCACCGGCUACCA   U    U^ UU   -         C          CCGAG 
      110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-26-o4_5p
mirBase accessionNone
Sequence 
0- UUCAAGUAAUCCAGGAUAGGCU -22
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Star sequence

Pma-Mir-26-o4_3p*
mirBase accessionNone
Sequence 
36- CCUGUCCUCGGUUGCUUGGCCU -58
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