Mir-26-P4b

MirGeneDB ID

Xla-Mir-26-P4b

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-26-P1c Xla-Mir-26-P1d Xla-Mir-26-P2e Xla-Mir-26-P2f Xla-Mir-26-P4a

Orthologues

Aca-Mir-26-P4 Ami-Mir-26-P4 Bta-Mir-26-P4 Cfa-Mir-26-P4 Cja-Mir-26-P4 Cpi-Mir-26-P4 Cpo-Mir-26-P4 Dno-Mir-26-P4 Dre-Mir-26-P4 Eca-Mir-26-P4 Ete-Mir-26-P4 Gga-Mir-26-P4 Gja-Mir-26-P4 Gmo-Mir-26-P4 Hsa-Mir-26-P4 Laf-Mir-26-P4 Lch-Mir-26-P4 Loc-Mir-26-P4 Mal-Mir-26-P4 Mdo-Mir-26-P4 Mml-Mir-26-P4 Mmr-Mir-26-P4 Mmu-Mir-26-P4 Mun-Mir-26-P4 Neu-Mir-26-P4 Oan-Mir-26-P4 Ocu-Mir-26-P4 Pab-Mir-26-P4 Pbv-Mir-26-P4 Pma-Mir-26-o4 Rno-Mir-26-P4 Sha-Mir-26-P4 Spt-Mir-26-P4 Sto-Mir-26-P4 Tgu-Mir-26-P4 Tni-Mir-26-P4 Xtr-Mir-26-P4

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030727.1: 124697493-124697553 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUGACAUUGGAAGAAAUGGCUGAGGCCUGGUUCAAGUAAUCCAGGAUAGGCUGUUUCCUCAAAGCACGGCCUACUCUUGAUUACUUGUUUCAGGAAGCAGCUCAUAUAGCACCAGAGUCCU

Get precursor sequence

Structure

        10          20        30        40        50          
UUGACAUUGGAAGAAAU--|    AGG     UU         C  GA      GUUUCCU 
                   GGCUG   CCUGG  CAAGUAAUC AG  UAGGCU       \
                   UCGAC   GGACU  GUUCAUUAG UC  AUCCGG       C
UCCUGAGACCACGAUAUAC^    GAA     UU         U  UC      CACGAAA 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Mature sequence

Xla-Mir-26-P4b_5p

mirBase accession

None

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

Get sequence

Star sequence

Xla-Mir-26-P4b_3p*

mirBase accession

None

Sequence

39- CCUACUCUUGAUUACUUGUUUC -61

Get sequence