MirGeneDB 3.0

MirGeneDB ID

Spt-Mir-26-P4

Family name MIR-26 (all species)
Seed UCAAGUA
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-26-P1  Spt-Mir-26-P2 
Orthologues Aca-Mir-26-P4  Ami-Mir-26-P4  Bta-Mir-26-P4  Cfa-Mir-26-P4  Cja-Mir-26-P4  Cpi-Mir-26-P4  Cpo-Mir-26-P4  Dno-Mir-26-P4  Dre-Mir-26-P4  Eca-Mir-26-P4  Ete-Mir-26-P4  Gga-Mir-26-P4  Gja-Mir-26-P4  Gmo-Mir-26-P4  Hsa-Mir-26-P4  Laf-Mir-26-P4  Lch-Mir-26-P4  Loc-Mir-26-P4  Mal-Mir-26-P4  Mdo-Mir-26-P4  Mml-Mir-26-P4  Mmr-Mir-26-P4  Mmu-Mir-26-P4  Mun-Mir-26-P4  Neu-Mir-26-P4  Oan-Mir-26-P4  Ocu-Mir-26-P4  Pab-Mir-26-P4  Pbv-Mir-26-P4  Pma-Mir-26-o4  Rno-Mir-26-P4  Sha-Mir-26-P4  Sto-Mir-26-P4  Tgu-Mir-26-P4  Tni-Mir-26-P4  Xla-Mir-26-P4a  Xla-Mir-26-P4b  Xtr-Mir-26-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01013826.1: 3622958-3623018 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCCCCCUCCCAGUGUGGGCCGCGGCCUGGUUCAAGUAAUCCAGGAUAGGCUGUUACCAAGCAGCCCGGCCUAUUCUUGAUUACUUGUUUCAGGACGCGGCUGCUUGGCACAUCGGCAACG
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Structure
        10          20        30        40        50          
UUCCCCCUCCCAGUGUG--|      G     UU         C          GUUACCA 
                   GGCCGCG CCUGG  CAAGUAAUC AGGAUAGGCU       \
                   UCGGCGC GGACU  GUUCAUUAG UCUUAUCCGG       A
GCAACGGCUACACGGUUCG^      A     UU         U          CCCGACG 
 .       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsNo
Mature sequence

Spt-Mir-26-P4_5p (predicted)

mirBase accessionNone
Sequence
0- UUCAAGUAAUCCAGGAUAGGCU -22
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Star sequence

Spt-Mir-26-P4_3p* (predicted)

mirBase accessionNone
Sequence
39- CCUAUUCUUGAUUACUUGUUUC -61
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