Mir-26-P4

MirGeneDB ID

Cfa-Mir-26-P4

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-26a-2

Paralogues

Cfa-Mir-26-P1 Cfa-Mir-26-P2

Orthologues

Aca-Mir-26-P4 Ami-Mir-26-P4 Bta-Mir-26-P4 Cja-Mir-26-P4 Cpi-Mir-26-P4 Cpo-Mir-26-P4 Dno-Mir-26-P4 Dre-Mir-26-P4 Eca-Mir-26-P4 Ete-Mir-26-P4 Gga-Mir-26-P4 Gja-Mir-26-P4 Gmo-Mir-26-P4 Hsa-Mir-26-P4 Laf-Mir-26-P4 Lch-Mir-26-P4 Loc-Mir-26-P4 Mal-Mir-26-P4 Mdo-Mir-26-P4 Mml-Mir-26-P4 Mmr-Mir-26-P4 Mmu-Mir-26-P4 Mun-Mir-26-P4 Neu-Mir-26-P4 Oan-Mir-26-P4 Ocu-Mir-26-P4 Pab-Mir-26-P4 Pbv-Mir-26-P4 Pma-Mir-26-o4 Rno-Mir-26-P4 Sha-Mir-26-P4 Spt-Mir-26-P4 Sto-Mir-26-P4 Tgu-Mir-26-P4 Tni-Mir-26-P4 Xla-Mir-26-P4a Xla-Mir-26-P4b Xtr-Mir-26-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chr10: 1880513-1880572 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAGGAAGCUCCCACAGAGGCUGUGGCUGGAUUCAAGUAAUCCAGGAUAGGCUGUUUCCGUCUGUGAGGCCUAUUCUUGAUUACUUGUUUCUGGAGGCAGCUGAUGGUCCGCCACCUGAAA

Get precursor sequence

Structure

        10          20        30        40        50         
CAGGAAGCUCCCACAGA--|     GG UG  UU         C          GUUUCC 
                   GGCUGU  C  GA  CAAGUAAUC AGGAUAGGCU      G
                   UCGACG  G  CU  GUUCAUUAG UCUUAUCCGG      U
AAAGUCCACCGCCUGGUAG^     GA GU  UU         U          AGUGUC 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-26-P4_5p

mirBase accession

MIMAT0006595

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

Get sequence

Proposed targets

TargetScanVert: cfa-miR-26a
miRDB: MIMAT0006595

Star sequence

Cfa-Mir-26-P4_3p*

mirBase accession

None

Sequence

38- CCUAUUCUUGAUUACUUGUUUC -60

Get sequence