MirGeneDB ID | Cja-Mir-26-P4 |
---|---|
Family name | MIR-26 (all species) |
Seed | UCAAGUA |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | Cja-Mir-26-P1 Cja-Mir-26-P2 |
Orthologues | Aca-Mir-26-P4 Ami-Mir-26-P4 Bta-Mir-26-P4 Cfa-Mir-26-P4 Cpi-Mir-26-P4 Cpo-Mir-26-P4 Dno-Mir-26-P4 Dre-Mir-26-P4 Eca-Mir-26-P4 Ete-Mir-26-P4 Gga-Mir-26-P4 Gja-Mir-26-P4 Gmo-Mir-26-P4 Hsa-Mir-26-P4 Laf-Mir-26-P4 Lch-Mir-26-P4 Loc-Mir-26-P4 Mal-Mir-26-P4 Mdo-Mir-26-P4 Mml-Mir-26-P4 Mmr-Mir-26-P4 Mmu-Mir-26-P4 Mun-Mir-26-P4 Neu-Mir-26-P4 Oan-Mir-26-P4 Ocu-Mir-26-P4 Pab-Mir-26-P4 Pbv-Mir-26-P4 Pma-Mir-26-o4 Rno-Mir-26-P4 Sha-Mir-26-P4 Spt-Mir-26-P4 Sto-Mir-26-P4 Tgu-Mir-26-P4 Tni-Mir-26-P4 Xla-Mir-26-P4a Xla-Mir-26-P4b Xtr-Mir-26-P4 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021923.1: 58317650-58317709 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GAGAAAAUUUCCAUAGAGGCUGUGGCUGGAUUCAAGUAAUCCAGGAUAGGCUGUUUCCAUCUGUGAGGCCUAUUCUUGAUUACUUGUUUCUGGAGGCAGCUGAUGGUCCACCGCUGGAAAGet precursor sequence |
Structure | 10 20 30 40 50 GAGAAAAUUUCCAUAGA--| GG UG UU C GUUUCC GGCUGU C GA CAAGUAAUC AGGAUAGGCU A UCGACG G CU GUUCAUUAG UCUUAUCCGG U AAAGGUCGCCACCUGGUAG^ GA GU UU U AGUGUC . 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | CNNC at 3p(+17) |
Mature sequence | Cja-Mir-26-P4_5p |
mirBase accession | None |
Sequence |
0- UUCAAGUAAUCCAGGAUAGGCU -22
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|
Star sequence | Cja-Mir-26-P4_3p* |
mirBase accession | None |
Sequence |
38- CCUAUUCUUGAUUACUUGUUUC -60
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|