| MirGeneDB ID | Cja-Mir-26-P2 |
|---|---|
| Family name | MIR-26 (all species) |
| Seed | UCAAGUA |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-26-P1 Cja-Mir-26-P4 |
| Orthologues | Aca-Mir-26-P2 Bta-Mir-26-P2 Cfa-Mir-26-P2 Cli-Mir-26-P2 Cpi-Mir-26-P2 Cpo-Mir-26-P2 Dno-Mir-26-P2 Dre-Mir-26-P2a Eca-Mir-26-P2 Ete-Mir-26-P2 Gga-Mir-26-P2 Gja-Mir-26-P2 Gmo-Mir-26-P2a Gmo-Mir-26-P2b Hsa-Mir-26-P2 Laf-Mir-26-P2 Lch-Mir-26-P2 Loc-Mir-26-P2 Mal-Mir-26-P2a Mal-Mir-26-P2b Mdo-Mir-26-P2 Mml-Mir-26-P2 Mmr-Mir-26-P2 Mmu-Mir-26-P2 Mun-Mir-26-P2 Neu-Mir-26-P2 Oan-Mir-26-P2 Ocu-Mir-26-P2 Pab-Mir-26-P2 Pbv-Mir-26-P2 Pma-Mir-26-o2 Rno-Mir-26-P2 Sha-Mir-26-P2 Spt-Mir-26-P2 Sto-Mir-26-P2 Tgu-Mir-26-P2 Tni-Mir-26-P2b Xla-Mir-26-P2e Xla-Mir-26-P2f Xtr-Mir-26-P2c Xtr-Mir-26-P2d |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021920.1: 136632239-136632294 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CCCCCUCACCCCACCCUGCCCGGGACCCAGUUCAAGUAAUUCAGGAUAGGUUGUGUGCUGUCCAGCCUGUUCUCCAUUACUUGGCUCGGGGACCGGUGCACUGCAGCCUUGGGGUGGet precursor sequence |
| Structure | 10 20 30 40 50 CCCCCUCACCCCACCCUGC- GA -| U UC GUGUG CCGG CCC AGU CAAGUAAU AGGAUAGGUU \ GGCC GGG UCG GUUCAUUA UCUUGUCCGA C GUGGGGUUCCGACGUCACGU AG C^ - CC CCUGU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Cja-Mir-26-P2_5p |
| mirBase accession | None |
| Sequence |
0- UUCAAGUAAUUCAGGAUAGGUU -22
Get sequence
|
| Star sequence | Cja-Mir-26-P2_3p* |
| mirBase accession | None |
| Sequence |
35- CCUGUUCUCCAUUACUUGGCU -56
Get sequence
|
