MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-26-P2

Family name MIR-26 (all species)
Seed UCAAGUA
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-26-P1  Cja-Mir-26-P4 
Orthologues Aca-Mir-26-P2  Bta-Mir-26-P2  Cfa-Mir-26-P2  Cli-Mir-26-P2  Cpi-Mir-26-P2  Cpo-Mir-26-P2  Dno-Mir-26-P2  Dre-Mir-26-P2a  Eca-Mir-26-P2  Ete-Mir-26-P2  Gga-Mir-26-P2  Gja-Mir-26-P2  Gmo-Mir-26-P2a  Gmo-Mir-26-P2b  Hsa-Mir-26-P2  Laf-Mir-26-P2  Lch-Mir-26-P2  Loc-Mir-26-P2  Mal-Mir-26-P2a  Mal-Mir-26-P2b  Mdo-Mir-26-P2  Mml-Mir-26-P2  Mmr-Mir-26-P2  Mmu-Mir-26-P2  Mun-Mir-26-P2  Neu-Mir-26-P2  Oan-Mir-26-P2  Ocu-Mir-26-P2  Pab-Mir-26-P2  Pbv-Mir-26-P2  Pma-Mir-26-o2  Rno-Mir-26-P2  Sha-Mir-26-P2  Spt-Mir-26-P2  Sto-Mir-26-P2  Tgu-Mir-26-P2  Tni-Mir-26-P2b  Xla-Mir-26-P2e  Xla-Mir-26-P2f  Xtr-Mir-26-P2c  Xtr-Mir-26-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021920.1: 136632239-136632294 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCCUCACCCCACCCUGCCCGGGACCCAGUUCAAGUAAUUCAGGAUAGGUUGUGUGCUGUCCAGCCUGUUCUCCAUUACUUGGCUCGGGGACCGGUGCACUGCAGCCUUGGGGUG
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Structure
        10         20         30        40        50        
CCCCCUCACCCCACCCUGC-    GA   -|  U        UC          GUGUG 
                    CCGG  CCC AGU CAAGUAAU  AGGAUAGGUU     \
                    GGCC  GGG UCG GUUCAUUA  UCUUGUCCGA     C
GUGGGGUUCCGACGUCACGU    AG   C^  -        CC          CCUGU 
    110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Cja-Mir-26-P2_5p
mirBase accessionNone
Sequence 
0- UUCAAGUAAUUCAGGAUAGGUU -22
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Star sequence

Cja-Mir-26-P2_3p*
mirBase accessionNone
Sequence 
35- CCUGUUCUCCAUUACUUGGCU -56
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