Mir-26-P2b

MirGeneDB ID

Tni-Mir-26-P2b

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

Paralogues

Tni-Mir-26-P1a Tni-Mir-26-P1b Tni-Mir-26-P4

Orthologues

Aca-Mir-26-P2 Bta-Mir-26-P2 Cfa-Mir-26-P2 Cja-Mir-26-P2 Cli-Mir-26-P2 Cpi-Mir-26-P2 Cpo-Mir-26-P2 Dno-Mir-26-P2 Eca-Mir-26-P2 Ete-Mir-26-P2 Gga-Mir-26-P2 Gja-Mir-26-P2 Gmo-Mir-26-P2b Hsa-Mir-26-P2 Laf-Mir-26-P2 Lch-Mir-26-P2 Loc-Mir-26-P2 Mal-Mir-26-P2b Mdo-Mir-26-P2 Mml-Mir-26-P2 Mmr-Mir-26-P2 Mmu-Mir-26-P2 Mun-Mir-26-P2 Neu-Mir-26-P2 Oan-Mir-26-P2 Ocu-Mir-26-P2 Pab-Mir-26-P2 Pbv-Mir-26-P2 Pma-Mir-26-o2 Rno-Mir-26-P2 Sha-Mir-26-P2 Spt-Mir-26-P2 Sto-Mir-26-P2 Tgu-Mir-26-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

3: 1744449-1744509 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGGAGAUGCUCCUCAUGGGUCUGGGCCUGAUUCAAGUAAUCCAGGAUAGGUUUGUUCUGACAAGCGUAGCCUAUUCUGGAAGACUUGGUUCAGGAACGCGGCCCGCAGCCACACCAGAAGA

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Structure

        10         20         30        40        50          
CGGAGAUGCUCCUCAUG-    -| GG     UU     AA             UGUUCUG 
                  GGUC UG  CCUGA  CAAGU  UCCAGGAUAGGUU       \
                  CCGG GC  GGACU  GUUCA  AGGUCUUAUCCGA       A
AGAAGACCACACCGACGC    C^ AA     UG     GA             UGCGAAC 
 .       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-26-P2b_5p

mirBase accession

None

Sequence

0- UUCAAGUAAUCCAGGAUAGGUU -22

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Star sequence

Tni-Mir-26-P2b_3p*

mirBase accession

None

Sequence

39- CCUAUUCUGGAAGACUUGGUUC -61

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