MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-26-P2

Family name MIR-26 (all species)
Seed UCAAGUA
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-26-P1  Gja-Mir-26-P4 
Orthologues Aca-Mir-26-P2  Bta-Mir-26-P2  Cfa-Mir-26-P2  Cja-Mir-26-P2  Cli-Mir-26-P2  Cpi-Mir-26-P2  Cpo-Mir-26-P2  Dno-Mir-26-P2  Dre-Mir-26-P2a  Eca-Mir-26-P2  Ete-Mir-26-P2  Gga-Mir-26-P2  Gmo-Mir-26-P2a  Gmo-Mir-26-P2b  Hsa-Mir-26-P2  Laf-Mir-26-P2  Lch-Mir-26-P2  Loc-Mir-26-P2  Mal-Mir-26-P2a  Mal-Mir-26-P2b  Mdo-Mir-26-P2  Mml-Mir-26-P2  Mmr-Mir-26-P2  Mmu-Mir-26-P2  Mun-Mir-26-P2  Neu-Mir-26-P2  Oan-Mir-26-P2  Ocu-Mir-26-P2  Pab-Mir-26-P2  Pbv-Mir-26-P2  Pma-Mir-26-o2  Rno-Mir-26-P2  Sha-Mir-26-P2  Spt-Mir-26-P2  Sto-Mir-26-P2  Tgu-Mir-26-P2  Tni-Mir-26-P2b  Xla-Mir-26-P2e  Xla-Mir-26-P2f  Xtr-Mir-26-P2c  Xtr-Mir-26-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015160300.1: 37707-37767 [+]
Precursor
(pre-Mir +30nt flank)
UUAUCCUUCCUUCUAAAGGCUGUUGCCGGGUUCAAGUAAUCCAGGAUAGGCUGUGGGUACUGUAGUCAGCCUGUUCUCGAUUACUUGGCCUUGGAGGCAGCCAGCAGCACCAGAGUGGAUG
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Structure
        10          20        30        40        50          
UUAUCCUUCCUUCUAAA--|     UG     UU         C          GUGGGUA 
                   GGCUGU  CCGGG  CAAGUAAUC AGGAUAGGCU       \
                   CCGACG  GGUUC  GUUCAUUAG UCUUGUCCGA       C
GUAGGUGAGACCACGACGA^     GA     CG         C          CUGAUGU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Gja-Mir-26-P2_5p
mirBase accessionNone
Sequence 
0- UUCAAGUAAUCCAGGAUAGGCU -22
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Star sequence

Gja-Mir-26-P2_3p* (predicted)
mirBase accessionNone
Sequence 
39- CCUGUUCUCGAUUACUUGGCCU -61
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