Mir-26-P1

MirGeneDB ID

Gja-Mir-26-P1

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-26-P2 Gja-Mir-26-P4

Orthologues

Aca-Mir-26-P1 Ami-Mir-26-P1 Bta-Mir-26-P1 Cfa-Mir-26-P1 Cli-Mir-26-P1 Cmi-Mir-26-P1 Cpi-Mir-26-P1 Cpo-Mir-26-P1 Dno-Mir-26-P1 Dre-Mir-26-P1a Dre-Mir-26-P1b Ete-Mir-26-P1 Gga-Mir-26-P1 Gmo-Mir-26-P1a Gmo-Mir-26-P1b Hsa-Mir-26-P1 Lch-Mir-26-P1 Loc-Mir-26-P1 Mal-Mir-26-P1a Mal-Mir-26-P1b Mdo-Mir-26-P1 Mml-Mir-26-P1 Mmu-Mir-26-P1 Mun-Mir-26-P1 Oan-Mir-26-P1 Ocu-Mir-26-P1 Pbv-Mir-26-P1 Pma-Mir-26-o1 Rno-Mir-26-P1 Sha-Mir-26-P1 Spt-Mir-26-P1 Sto-Mir-26-P1 Tgu-Mir-26-P1 Tni-Mir-26-P1a Tni-Mir-26-P1b Xla-Mir-26-P1c Xla-Mir-26-P1d Xtr-Mir-26-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015174375.1: 34934-34994 [-]

Precursor
(pre-Mir +30nt flank)

ACAGCACUUCUGGAAGAGGCUGUGACCCAGUUCAAGUAAUCCAGGAUAGGCUGUGUGCAUUCUUAAUGGCCUAUCCUUAAUUACUUGCCCUGGGAGGUAGCCACAACACAGUGGAUCGGAC

Get precursor sequence

Structure

        10          20        30        40        50          
ACAGCACUUCUGGAAGA--|    UGA     UU        CC          GUGUGCA 
                   GGCUG   CCCAG  CAAGUAAU  AGGAUAGGCU       \
                   CCGAU   GGGUC  GUUCAUUA  UCCUAUCCGG       U
CAGGCUAGGUGACACAACA^    GGA     CC        AU          UAAUUCU 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

Comment

There is a 1 nt mismatch at position 20 on the 3p arm between the source of the genome (G. japonicus) and the source of the reads (C. variegatus).

3' NTU

Motifs

UGUG in loop

Tissue expression

To

Mature sequence

Gja-Mir-26-P1_5p

mirBase accession

None

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

Get sequence

Star sequence

Gja-Mir-26-P1_3p*

mirBase accession

None

Sequence

39- CCUAUCCUUAAUUACUUGCCCU -61

Get sequence