MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-26-P1b

Family name MIR-26 (all species)
Seed UCAAGUA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-26a-2
Paralogues Dre-Mir-26-P1a  Dre-Mir-26-P2a  Dre-Mir-26-P4 
Orthologues Aca-Mir-26-P1  Ami-Mir-26-P1  Bta-Mir-26-P1  Cfa-Mir-26-P1  Cli-Mir-26-P1  Cmi-Mir-26-P1  Cpi-Mir-26-P1  Cpo-Mir-26-P1  Dno-Mir-26-P1  Ete-Mir-26-P1  Gga-Mir-26-P1  Gja-Mir-26-P1  Gmo-Mir-26-P1b  Hsa-Mir-26-P1  Lch-Mir-26-P1  Loc-Mir-26-P1  Mal-Mir-26-P1b  Mdo-Mir-26-P1  Mml-Mir-26-P1  Mmu-Mir-26-P1  Mun-Mir-26-P1  Oan-Mir-26-P1  Ocu-Mir-26-P1  Pbv-Mir-26-P1  Pma-Mir-26-o1  Rno-Mir-26-P1  Sha-Mir-26-P1  Spt-Mir-26-P1  Sto-Mir-26-P1  Tgu-Mir-26-P1  Tni-Mir-26-P1b  Xtr-Mir-26-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr2: 21375503-21375560 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUUGAGUGCUGGAAGUGGUUGUUCCCUUGUUCAAGUAAUCCAGGAUAGGCUGUCUGUCCUGGAGGCCUAUUCAUGAUUACUUGCACUAGGUGGCAGCCGUUGCCCUUCAUGGAACUC
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Structure
        10          20        30        40        50        
ACUUGAGUGCUGGAAGU--|     UC   U  U         CA         GUCUG 
                   GGUUGU  CCU GU CAAGUAAUC  GGAUAGGCU     U
                   CCGACG  GGA CA GUUCAUUAG  CUUAUCCGG     C
CUCAAGGUACUUCCCGUUG^     GU   U  C         UA         AGGUC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-26-P1b_5p

mirBase accessionMIMAT0001794
Sequence
0- UUCAAGUAAUCCAGGAUAGGCU -22
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Proposed targets TargetScanFish: dre-miR-26a
Star sequence

Dre-Mir-26-P1b_3p*

mirBase accessionMIMAT0031948
Sequence
36- CCUAUUCAUGAUUACUUGCACU -58
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