Mir-26-P1b

MirGeneDB ID

Dre-Mir-26-P1b

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-26a-2

Paralogues

Dre-Mir-26-P1a Dre-Mir-26-P2a Dre-Mir-26-P4

Orthologues

Aca-Mir-26-P1 Ami-Mir-26-P1 Bta-Mir-26-P1 Cfa-Mir-26-P1 Cja-Mir-26-P1 Cli-Mir-26-P1 Cmi-Mir-26-P1 Cpi-Mir-26-P1 Cpo-Mir-26-P1 Dno-Mir-26-P1 Eca-Mir-26-P1 Ete-Mir-26-P1 Gga-Mir-26-P1 Gja-Mir-26-P1 Gmo-Mir-26-P1b Hsa-Mir-26-P1 Laf-Mir-26-P1 Lch-Mir-26-P1 Loc-Mir-26-P1 Mal-Mir-26-P1b Mdo-Mir-26-P1 Mml-Mir-26-P1 Mmr-Mir-26-P1 Mmu-Mir-26-P1 Mun-Mir-26-P1 Neu-Mir-26-P1 Oan-Mir-26-P1 Ocu-Mir-26-P1 Pab-Mir-26-P1 Pbv-Mir-26-P1 Pma-Mir-26-o1 Rno-Mir-26-P1 Sha-Mir-26-P1 Spt-Mir-26-P1 Sto-Mir-26-P1 Tgu-Mir-26-P1 Tni-Mir-26-P1b Xtr-Mir-26-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr2: 21375503-21375560 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACUUGAGUGCUGGAAGUGGUUGUUCCCUUGUUCAAGUAAUCCAGGAUAGGCUGUCUGUCCUGGAGGCCUAUUCAUGAUUACUUGCACUAGGUGGCAGCCGUUGCCCUUCAUGGAACUC

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Structure

        10          20        30        40        50        
ACUUGAGUGCUGGAAGU--|     UC   U  U         CA         GUCUG 
                   GGUUGU  CCU GU CAAGUAAUC  GGAUAGGCU     U
                   CCGACG  GGA CA GUUCAUUAG  CUUAUCCGG     C
CUCAAGGUACUUCCCGUUG^     GU   U  C         UA         AGGUC 
      110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-26-P1b_5p

mirBase accession

MIMAT0001794

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

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Proposed targets

TargetScanFish: dre-miR-26a

Star sequence

Dre-Mir-26-P1b_3p*

mirBase accession

MIMAT0031948

Sequence

36- CCUAUUCAUGAUUACUUGCACU -58

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