Mir-26-P1

MirGeneDB ID

Gga-Mir-26-P1

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-26a

Paralogues

Gga-Mir-26-P2 Gga-Mir-26-P4

Orthologues

Aca-Mir-26-P1 Ami-Mir-26-P1 Bta-Mir-26-P1 Cfa-Mir-26-P1 Cja-Mir-26-P1 Cli-Mir-26-P1 Cmi-Mir-26-P1 Cpi-Mir-26-P1 Cpo-Mir-26-P1 Dno-Mir-26-P1 Dre-Mir-26-P1a Dre-Mir-26-P1b Eca-Mir-26-P1 Ete-Mir-26-P1 Gja-Mir-26-P1 Gmo-Mir-26-P1a Gmo-Mir-26-P1b Hsa-Mir-26-P1 Laf-Mir-26-P1 Lch-Mir-26-P1 Loc-Mir-26-P1 Mal-Mir-26-P1a Mal-Mir-26-P1b Mdo-Mir-26-P1 Mml-Mir-26-P1 Mmr-Mir-26-P1 Mmu-Mir-26-P1 Mun-Mir-26-P1 Neu-Mir-26-P1 Oan-Mir-26-P1 Ocu-Mir-26-P1 Pab-Mir-26-P1 Pbv-Mir-26-P1 Pma-Mir-26-o1 Rno-Mir-26-P1 Sha-Mir-26-P1 Spt-Mir-26-P1 Sto-Mir-26-P1 Tgu-Mir-26-P1 Tni-Mir-26-P1a Tni-Mir-26-P1b Xla-Mir-26-P1c Xla-Mir-26-P1d Xtr-Mir-26-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

2: 4629104-4629164 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUAAUCCUGUUACAGAAGGCUGUCACCUGGUUCAAGUAAUCCAGGAUAGGCUGUAUCCAUUCCUGCUGGCCUAUUCUUGGUUACUUGCACUGGGAGGCAGCCGCAGUGCUGCAAAUGAGGA

Get precursor sequence

Structure

        10          20        30        40        50          
UUAAUCCUGUUACAGAA--|      A  UG  U         C          GUAUCCA 
                   GGCUGUC CC  GU CAAGUAAUC AGGAUAGGCU       \
                   CCGACGG GG  CA GUUCAUUGG UCUUAUCCGG       U
AGGAGUAAACGUCGUGACG^      A  GU  C         U          UCGUCCU 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-26-P1_5p

mirBase accession

MIMAT0001118

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

Get sequence

Proposed targets

TargetScanVert: gga-miR-26a-5p
miRDB: MIMAT0001118

Star sequence

Gga-Mir-26-P1_3p*

mirBase accession

MIMAT0026501

Sequence

39- CCUAUUCUUGGUUACUUGCACU -61

Get sequence

Proposed targets

TargetScanVert: gga-miR-26a-3p
miRDB: MIMAT0026501