Mir-26-o1

MirGeneDB ID

Pma-Mir-26-o1

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-26a-1

Paralogues

Pma-Mir-26-o2 Pma-Mir-26-o3 Pma-Mir-26-o4

Orthologues

Aca-Mir-26-P1 Ami-Mir-26-P1 Bta-Mir-26-P1 Cfa-Mir-26-P1 Cja-Mir-26-P1 Cli-Mir-26-P1 Cmi-Mir-26-P1 Cpi-Mir-26-P1 Cpo-Mir-26-P1 Dno-Mir-26-P1 Dre-Mir-26-P1a Dre-Mir-26-P1b Eca-Mir-26-P1 Ete-Mir-26-P1 Gga-Mir-26-P1 Gja-Mir-26-P1 Gmo-Mir-26-P1a Gmo-Mir-26-P1b Hsa-Mir-26-P1 Laf-Mir-26-P1 Lch-Mir-26-P1 Loc-Mir-26-P1 Mal-Mir-26-P1a Mal-Mir-26-P1b Mdo-Mir-26-P1 Mml-Mir-26-P1 Mmr-Mir-26-P1 Mmu-Mir-26-P1 Mun-Mir-26-P1 Neu-Mir-26-P1 Oan-Mir-26-P1 Ocu-Mir-26-P1 Pab-Mir-26-P1 Pbv-Mir-26-P1 Rno-Mir-26-P1 Sha-Mir-26-P1 Spt-Mir-26-P1 Sto-Mir-26-P1 Tgu-Mir-26-P1 Tni-Mir-26-P1a Tni-Mir-26-P1b Xla-Mir-26-P1c Xla-Mir-26-P1d Xtr-Mir-26-P1

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046072.1: 10549245-10549307 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAAGAGGGGAGCCCCUUGGAUGCAGCCUGGUUCAAGUAAUCCAGGAUAGGCUGGCGUCUCAGACCCCGCGGCCUGUCCUUGCUUACUUGGACCAGGAGGUAGUCCACUUGAGCCGCCUGCCGA

Get precursor sequence

Structure

        10         20         30        40        50        60 
CAAGAGGGGAGCCCCUU-   -|  AG              UCC          GGCGUCUC 
                  GGA UGC  CCUGGUUCAAGUAA   AGGAUAGGCU        \
                  CCU AUG  GGACCAGGUUCAUU   UCCUGUCCGG        A
AGCCGUCCGCCGAGUUCA   G^  GA              CGU          CGCCCCAG 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-26-o1_5p

mirBase accession

MIMAT0019408

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

Get sequence

Star sequence

Pma-Mir-26-o1_3p*

mirBase accession

MIMAT0019409

Sequence

41- CCUGUCCUUGCUUACUUGGACC -63

Get sequence