MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-26-P1

Family name MIR-26 (all species)
Seed UCAAGUA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-26-P2  Loc-Mir-26-P4 
Orthologues Aca-Mir-26-P1  Ami-Mir-26-P1  Bta-Mir-26-P1  Cfa-Mir-26-P1  Cja-Mir-26-P1  Cli-Mir-26-P1  Cmi-Mir-26-P1  Cpi-Mir-26-P1  Cpo-Mir-26-P1  Dno-Mir-26-P1  Dre-Mir-26-P1a  Dre-Mir-26-P1b  Eca-Mir-26-P1  Ete-Mir-26-P1  Gga-Mir-26-P1  Gja-Mir-26-P1  Gmo-Mir-26-P1a  Gmo-Mir-26-P1b  Hsa-Mir-26-P1  Laf-Mir-26-P1  Lch-Mir-26-P1  Mal-Mir-26-P1a  Mal-Mir-26-P1b  Mdo-Mir-26-P1  Mml-Mir-26-P1  Mmr-Mir-26-P1  Mmu-Mir-26-P1  Mun-Mir-26-P1  Neu-Mir-26-P1  Oan-Mir-26-P1  Ocu-Mir-26-P1  Pab-Mir-26-P1  Pbv-Mir-26-P1  Pma-Mir-26-o1  Rno-Mir-26-P1  Sha-Mir-26-P1  Spt-Mir-26-P1  Sto-Mir-26-P1  Tgu-Mir-26-P1  Tni-Mir-26-P1a  Tni-Mir-26-P1b  Xla-Mir-26-P1c  Xla-Mir-26-P1d  Xtr-Mir-26-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG9: 25645176-25645236 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCUGUGUUCAGGUUAAAGGCUGUGACCUGGUUCAAGUAAUCCAGGAUAGGCUGUGUGUGAUCAGAUUGGCCUAUUCUUGAUUACUUGCACUGGGGGGCAGCUGUAACUCUUCAAUGAAAAG
Get precursor sequence
Structure
        10          20        30        40        50          
UCUGUGUUCAGGUUAAA--|     GA  UG  U         C          GUGUGUG 
                   GGCUGU  CC  GU CAAGUAAUC AGGAUAGGCU       \
                   UCGACG  GG  CA GUUCAUUAG UCUUAUCCGG       A
GAAAAGUAACUUCUCAAUG^     GG  GU  C         U          UUAGACU 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-26-P1_5p
mirBase accessionNone
Sequence 
0- UUCAAGUAAUCCAGGAUAGGCU -22
Get sequence
Star sequence

Loc-Mir-26-P1_3p*
mirBase accessionNone
Sequence 
39- CCUAUUCUUGAUUACUUGCACU -61
Get sequence