MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-26-P1a

Family name MIR-26 (all species)
Seed UCAAGUA
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-26a-1
Paralogues Gmo-Mir-26-P1b  Gmo-Mir-26-P2a  Gmo-Mir-26-P2b  Gmo-Mir-26-P4 
Orthologues Aca-Mir-26-P1  Ami-Mir-26-P1  Bta-Mir-26-P1  Cfa-Mir-26-P1  Cja-Mir-26-P1  Cli-Mir-26-P1  Cmi-Mir-26-P1  Cpi-Mir-26-P1  Cpo-Mir-26-P1  Dno-Mir-26-P1  Dre-Mir-26-P1a  Eca-Mir-26-P1  Ete-Mir-26-P1  Gga-Mir-26-P1  Gja-Mir-26-P1  Hsa-Mir-26-P1  Laf-Mir-26-P1  Lch-Mir-26-P1  Loc-Mir-26-P1  Mal-Mir-26-P1a  Mdo-Mir-26-P1  Mml-Mir-26-P1  Mmr-Mir-26-P1  Mmu-Mir-26-P1  Mun-Mir-26-P1  Neu-Mir-26-P1  Oan-Mir-26-P1  Ocu-Mir-26-P1  Pab-Mir-26-P1  Pbv-Mir-26-P1  Pma-Mir-26-o1  Rno-Mir-26-P1  Sha-Mir-26-P1  Spt-Mir-26-P1  Sto-Mir-26-P1  Tgu-Mir-26-P1  Tni-Mir-26-P1a  Xtr-Mir-26-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_827: 75167-75227 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCGACAGCUGUCUCCUCGCUGUGACCCUGUUCAAGUAAUCCAGGAUAGGCUGUUUUUGUCUGCUCCGGCCUGUCCAGGAAGACUUGCACUGGGGGGCCGUGACUGCUCUGCAAGGGAUCA
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Structure
        10          20        30        40        50          
GCCGACAGCUGUCUCCU--|  U  GA   U  U     AA   A         GUUUUUG 
                   CGC GU  CCC GU CAAGU  UCC GGAUAGGCU       \
                   GUG CG  GGG CA GUUCA  AGG CCUGUCCGG       U
ACUAGGGAACGUCUCGUCA^  C  GG   U  C     GA   A         CCUCGUC 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-26-P1a_5p
mirBase accessionMIMAT0044164
Sequence 
0- UUCAAGUAAUCCAGGAUAGGCU -22
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Star sequence

Gmo-Mir-26-P1a_3p*
mirBase accessionMIMAT0044316
Sequence 
39- CCUGUCCAGGAAGACUUGCACU -61
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