Mir-26-P1b

MirGeneDB ID

Gmo-Mir-26-P1b

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-26a-2

Paralogues

Gmo-Mir-26-P1a Gmo-Mir-26-P2a Gmo-Mir-26-P2b Gmo-Mir-26-P4

Orthologues

Aca-Mir-26-P1 Ami-Mir-26-P1 Bta-Mir-26-P1 Cfa-Mir-26-P1 Cja-Mir-26-P1 Cli-Mir-26-P1 Cmi-Mir-26-P1 Cpi-Mir-26-P1 Cpo-Mir-26-P1 Dno-Mir-26-P1 Dre-Mir-26-P1b Eca-Mir-26-P1 Ete-Mir-26-P1 Gga-Mir-26-P1 Gja-Mir-26-P1 Hsa-Mir-26-P1 Laf-Mir-26-P1 Lch-Mir-26-P1 Loc-Mir-26-P1 Mal-Mir-26-P1b Mdo-Mir-26-P1 Mml-Mir-26-P1 Mmr-Mir-26-P1 Mmu-Mir-26-P1 Mun-Mir-26-P1 Neu-Mir-26-P1 Oan-Mir-26-P1 Ocu-Mir-26-P1 Pab-Mir-26-P1 Pbv-Mir-26-P1 Pma-Mir-26-o1 Rno-Mir-26-P1 Sha-Mir-26-P1 Spt-Mir-26-P1 Sto-Mir-26-P1 Tgu-Mir-26-P1 Tni-Mir-26-P1b Xtr-Mir-26-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_3167: 58039-58099 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGAUCCUCCUCAUGGCCGACUCCAACCCAGUUCAAGUAAUCCAGGAUAGGCUGUGUUGUCCUGGUUGGCCUAUUCACGAUUACUUGCCCCUGGGUGAGAGUCCUGGAUCAGCGAGGGACCA

Get precursor sequence

Structure

        10          20        30         40        50         
GGAUCCUCCUCAUGGCC--     CA      UU-|        CA         GUGUUG 
                   GACUC  ACCCAG   CAAGUAAUC  GGAUAGGCU      U
                   CUGAG  UGGGUC   GUUCAUUAG  CUUAUCCGG      C
ACCAGGGAGCGACUAGGUC     AG      CCC^        CA         UUGGUC 
 .       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Mir-26-P1b_5p

mirBase accession

MIMAT0044164

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

Get sequence

Star sequence

Gmo-Mir-26-P1b_3p*

mirBase accession

MIMAT0044213

Sequence

38- CCUAUUCACGAUUACUUGCCCCU -61

Get sequence