MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-26-P1

Family name MIR-26 (all species)
Seed UCAAGUA
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues
Orthologues Aca-Mir-26-P1  Ami-Mir-26-P1  Bta-Mir-26-P1  Cfa-Mir-26-P1  Cja-Mir-26-P1  Cli-Mir-26-P1  Cpi-Mir-26-P1  Cpo-Mir-26-P1  Dno-Mir-26-P1  Dre-Mir-26-P1a  Dre-Mir-26-P1b  Eca-Mir-26-P1  Ete-Mir-26-P1  Gga-Mir-26-P1  Gja-Mir-26-P1  Gmo-Mir-26-P1a  Gmo-Mir-26-P1b  Hsa-Mir-26-P1  Laf-Mir-26-P1  Lch-Mir-26-P1  Loc-Mir-26-P1  Mal-Mir-26-P1a  Mal-Mir-26-P1b  Mdo-Mir-26-P1  Mml-Mir-26-P1  Mmr-Mir-26-P1  Mmu-Mir-26-P1  Mun-Mir-26-P1  Neu-Mir-26-P1  Oan-Mir-26-P1  Ocu-Mir-26-P1  Pab-Mir-26-P1  Pbv-Mir-26-P1  Pma-Mir-26-o1  Rno-Mir-26-P1  Sha-Mir-26-P1  Spt-Mir-26-P1  Sto-Mir-26-P1  Tgu-Mir-26-P1  Tni-Mir-26-P1a  Tni-Mir-26-P1b  Xla-Mir-26-P1c  Xla-Mir-26-P1d  Xtr-Mir-26-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI636306.1: 14073-14133 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACAGGAUGUCCGAACUGGCUGAGACCUGGUUCAAGUAAUCCAGGAUAGGCUGUGUAUCUCCUGGUUGGCCUAUUCUCGAUUACUUGCACUAGGGGGUAGUCACCACACACACAAAACCAA
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Structure
        10          20        30        40        50          
CACAGGAUGUCCGAACU--|    AGA      U         C          GUGUAUC 
                   GGCUG   CCUGGU CAAGUAAUC AGGAUAGGCU       \
                   CUGAU   GGAUCA GUUCAUUAG UCUUAUCCGG       U
AACCAAAACACACACACCA^    GGG      C         C          UUGGUCC 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-26-P1_5p
mirBase accessionNone
Sequence 
0- UUCAAGUAAUCCAGGAUAGGCU -22
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Star sequence

Cmi-Mir-26-P1_3p*
mirBase accessionNone
Sequence 
39- CCUAUUCUCGAUUACUUGCACU -61
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