Mir-26-P1c

MirGeneDB ID

Xla-Mir-26-P1c

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-26-P1d Xla-Mir-26-P2e Xla-Mir-26-P2f Xla-Mir-26-P4a Xla-Mir-26-P4b

Orthologues

Aca-Mir-26-P1 Ami-Mir-26-P1 Bta-Mir-26-P1 Cfa-Mir-26-P1 Cja-Mir-26-P1 Cli-Mir-26-P1 Cmi-Mir-26-P1 Cpi-Mir-26-P1 Cpo-Mir-26-P1 Dno-Mir-26-P1 Eca-Mir-26-P1 Ete-Mir-26-P1 Gga-Mir-26-P1 Gja-Mir-26-P1 Hsa-Mir-26-P1 Laf-Mir-26-P1 Lch-Mir-26-P1 Loc-Mir-26-P1 Mdo-Mir-26-P1 Mml-Mir-26-P1 Mmr-Mir-26-P1 Mmu-Mir-26-P1 Mun-Mir-26-P1 Neu-Mir-26-P1 Oan-Mir-26-P1 Ocu-Mir-26-P1 Pab-Mir-26-P1 Pbv-Mir-26-P1 Pma-Mir-26-o1 Rno-Mir-26-P1 Sha-Mir-26-P1 Spt-Mir-26-P1 Sto-Mir-26-P1 Tgu-Mir-26-P1 Xtr-Mir-26-P1

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030734.1: 8319770-8319830 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAUGGAAAUCCAGAAAUGGCAGUGGCCCGAUUCAAGUAAUCCAGGAUAGGCUGUUCACAUUCUGCGUGGCCUAUUCUUGAUUACUUGCAUUGGGAGGCAGCUAUUCAUGCCGCAGCAACUC

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Structure

        10          20        30        40        50          
CAUGGAAAUCCAGAAAU--|  A  GG      U         C          GUUCACA 
                   GGC GU  CCCGAU CAAGUAAUC AGGAUAGGCU       \
                   UCG CG  GGGUUA GUUCAUUAG UCUUAUCCGG       U
CUCAACGACGCCGUACUUA^  A  GA      C         U          UGCGUCU 
 .       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Em

Mature sequence

Xla-Mir-26-P1c_5p

mirBase accession

None

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

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Star sequence

Xla-Mir-26-P1c_3p*

mirBase accession

None

Sequence

39- CCUAUUCUUGAUUACUUGCAUU -61

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