MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-26-P1c

Family name MIR-26 (all species)
Seed UCAAGUA
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-26-P1d  Xla-Mir-26-P2e  Xla-Mir-26-P2f  Xla-Mir-26-P4a  Xla-Mir-26-P4b 
Orthologues Aca-Mir-26-P1  Ami-Mir-26-P1  Bta-Mir-26-P1  Cfa-Mir-26-P1  Cli-Mir-26-P1  Cmi-Mir-26-P1  Cpi-Mir-26-P1  Cpo-Mir-26-P1  Dno-Mir-26-P1  Ete-Mir-26-P1  Gga-Mir-26-P1  Gja-Mir-26-P1  Hsa-Mir-26-P1  Lch-Mir-26-P1  Loc-Mir-26-P1  Mdo-Mir-26-P1  Mml-Mir-26-P1  Mmu-Mir-26-P1  Mun-Mir-26-P1  Oan-Mir-26-P1  Ocu-Mir-26-P1  Pbv-Mir-26-P1  Pma-Mir-26-o1  Rno-Mir-26-P1  Sha-Mir-26-P1  Spt-Mir-26-P1  Sto-Mir-26-P1  Tgu-Mir-26-P1  Xtr-Mir-26-P1 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)
NC_030734.1: 8319770-8319830 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUGGAAAUCCAGAAAUGGCAGUGGCCCGAUUCAAGUAAUCCAGGAUAGGCUGUUCACAUUCUGCGUGGCCUAUUCUUGAUUACUUGCAUUGGGAGGCAGCUAUUCAUGCCGCAGCAACUC
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Structure
        10          20        30        40        50          
CAUGGAAAUCCAGAAAU--|  A  GG      U         C          GUUCACA 
                   GGC GU  CCCGAU CAAGUAAUC AGGAUAGGCU       \
                   UCG CG  GGGUUA GUUCAUUAG UCUUAUCCGG       U
CUCAACGACGCCGUACUUA^  A  GA      C         U          UGCGUCU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Eg He Re St St St St
Mature sequence

Xla-Mir-26-P1c_5p

mirBase accessionNone
Sequence
0- UUCAAGUAAUCCAGGAUAGGCU -22
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Star sequence

Xla-Mir-26-P1c_3p*

mirBase accessionNone
Sequence
39- CCUAUUCUUGAUUACUUGCAUU -61
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