MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-26-P1

Family name MIR-26 (all species)
Seed UCAAGUA
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-26-1
Paralogues Cpi-Mir-26-P2  Cpi-Mir-26-P4 
Orthologues Aca-Mir-26-P1  Ami-Mir-26-P1  Bta-Mir-26-P1  Cfa-Mir-26-P1  Cja-Mir-26-P1  Cli-Mir-26-P1  Cmi-Mir-26-P1  Cpo-Mir-26-P1  Dno-Mir-26-P1  Dre-Mir-26-P1a  Dre-Mir-26-P1b  Eca-Mir-26-P1  Ete-Mir-26-P1  Gga-Mir-26-P1  Gja-Mir-26-P1  Gmo-Mir-26-P1a  Gmo-Mir-26-P1b  Hsa-Mir-26-P1  Laf-Mir-26-P1  Lch-Mir-26-P1  Loc-Mir-26-P1  Mal-Mir-26-P1a  Mal-Mir-26-P1b  Mdo-Mir-26-P1  Mml-Mir-26-P1  Mmr-Mir-26-P1  Mmu-Mir-26-P1  Mun-Mir-26-P1  Neu-Mir-26-P1  Oan-Mir-26-P1  Ocu-Mir-26-P1  Pab-Mir-26-P1  Pbv-Mir-26-P1  Pma-Mir-26-o1  Rno-Mir-26-P1  Sha-Mir-26-P1  Spt-Mir-26-P1  Sto-Mir-26-P1  Tgu-Mir-26-P1  Tni-Mir-26-P1a  Tni-Mir-26-P1b  Xla-Mir-26-P1c  Xla-Mir-26-P1d  Xtr-Mir-26-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)		 JH584683: 1345283-1345343 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUAUUCUCCUGGAAAAGGUUGUGACCUGGUUCAAGUAAUCCAGGAUAGGCUGUGUGCAAUCUAAUUGGCCUAUUCUUGAUUACUUGCACUGGGAGGCAACCACGACAAAGUGAACCAGAU
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Structure
        10          20        30        40        50          
AUUAUUCUCCUGGAAAA--|     GA  UG  U         C          GUGUGCA 
                   GGUUGU  CC  GU CAAGUAAUC AGGAUAGGCU       \
                   CCAACG  GG  CA GUUCAUUAG UCUUAUCCGG       A
UAGACCAAGUGAAACAGCA^     GA  GU  C         U          UUAAUCU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Te Te Te To
Mature sequence

Cpi-Mir-26-P1_5p
mirBase accessionMIMAT0037660
Sequence 
0- UUCAAGUAAUCCAGGAUAGGCU -22
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Star sequence

Cpi-Mir-26-P1_3p*
mirBase accessionMIMAT0037661
Sequence 
39- CCUAUUCUUGAUUACUUGCACU -61
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