Mir-26-P1

MirGeneDB ID

Aca-Mir-26-P1

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

Green anole lizard (Anolis carolinensis)

MiRBase ID

aca-mir-26-2

Paralogues

Aca-Mir-26-P2 Aca-Mir-26-P4

Orthologues

Ami-Mir-26-P1 Bta-Mir-26-P1 Cfa-Mir-26-P1 Cja-Mir-26-P1 Cli-Mir-26-P1 Cmi-Mir-26-P1 Cpi-Mir-26-P1 Cpo-Mir-26-P1 Dno-Mir-26-P1 Dre-Mir-26-P1a Dre-Mir-26-P1b Eca-Mir-26-P1 Ete-Mir-26-P1 Gga-Mir-26-P1 Gja-Mir-26-P1 Gmo-Mir-26-P1a Gmo-Mir-26-P1b Hsa-Mir-26-P1 Laf-Mir-26-P1 Lch-Mir-26-P1 Loc-Mir-26-P1 Mal-Mir-26-P1a Mal-Mir-26-P1b Mdo-Mir-26-P1 Mml-Mir-26-P1 Mmr-Mir-26-P1 Mmu-Mir-26-P1 Mun-Mir-26-P1 Neu-Mir-26-P1 Oan-Mir-26-P1 Ocu-Mir-26-P1 Pab-Mir-26-P1 Pbv-Mir-26-P1 Pma-Mir-26-o1 Rno-Mir-26-P1 Sha-Mir-26-P1 Spt-Mir-26-P1 Sto-Mir-26-P1 Tgu-Mir-26-P1 Tni-Mir-26-P1a Tni-Mir-26-P1b Xla-Mir-26-P1c Xla-Mir-26-P1d Xtr-Mir-26-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(anoCar2)

6: 1202369-1202429 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCCAACUUUCAAGAAGAGGCUGUGACCUGCUUCAAGUAAUCCAGGAUAGGCUGUGUGCAUUCUUAAUGGCCUAUCCUUGAUUACUUGCACUGGGAAAUAGCCACAGCGCAAUGAACAGGAU

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Structure

        10          20        30        40        50          
GCCAACUUUCAAGAAGA--|     GA    CUU         C          GUGUGCA 
                   GGCUGU  CCUG   CAAGUAAUC AGGAUAGGCU       \
                   CCGAUA  GGGU   GUUCAUUAG UCCUAUCCGG       U
UAGGACAAGUAACGCGACA^     AA    CAC         U          UAAUUCU 
 .       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

Sk	Ta	Ta	To	Wh

Mature sequence

Aca-Mir-26-P1_5p

mirBase accession

MIMAT0021902

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

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Star sequence

Aca-Mir-26-P1_3p*

mirBase accession

MIMAT0021904

Sequence

39- CCUAUCCUUGAUUACUUGCACU -61

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