MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-26-P1d

Family name MIR-26 (all species)
Seed UCAAGUA
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-26-P1c  Xla-Mir-26-P2e  Xla-Mir-26-P2f  Xla-Mir-26-P4a  Xla-Mir-26-P4b 
Orthologues Aca-Mir-26-P1  Ami-Mir-26-P1  Bta-Mir-26-P1  Cfa-Mir-26-P1  Cja-Mir-26-P1  Cli-Mir-26-P1  Cmi-Mir-26-P1  Cpi-Mir-26-P1  Cpo-Mir-26-P1  Dno-Mir-26-P1  Eca-Mir-26-P1  Ete-Mir-26-P1  Gga-Mir-26-P1  Gja-Mir-26-P1  Hsa-Mir-26-P1  Laf-Mir-26-P1  Lch-Mir-26-P1  Loc-Mir-26-P1  Mdo-Mir-26-P1  Mml-Mir-26-P1  Mmr-Mir-26-P1  Mmu-Mir-26-P1  Mun-Mir-26-P1  Neu-Mir-26-P1  Oan-Mir-26-P1  Ocu-Mir-26-P1  Pab-Mir-26-P1  Pbv-Mir-26-P1  Pma-Mir-26-o1  Rno-Mir-26-P1  Sha-Mir-26-P1  Spt-Mir-26-P1  Sto-Mir-26-P1  Tgu-Mir-26-P1  Xtr-Mir-26-P1 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030735.1: 6761303-6761363 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUGGAAAUCCAGAACUGGCGGUGGCCCGGUUCAAGUAAUCCAGGAUAGGCUGUUCACAAUCUGCGUGGCCUAUUCUUGUUUACUUGCAUUGGGAGGCUGCUAUUCAUGUCACAGCAACUC
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Structure
        10          20        30        40        50          
CGUGGAAAUCCAGAACU--|     GG      U       UCC          GUUCACA 
                   GGCGGU  CCCGGU CAAGUAA   AGGAUAGGCU       \
                   UCGUCG  GGGUUA GUUCAUU   UCUUAUCCGG       A
CUCAACGACACUGUACUUA^     GA      C       UGU          UGCGUCU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-26-P1d_5p
mirBase accessionNone
Sequence 
0- UUCAAGUAAUCCAGGAUAGGCU -22
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Star sequence

Xla-Mir-26-P1d_3p*
mirBase accessionNone
Sequence 
39- CCUAUUCUUGUUUACUUGCAUU -61
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