| MirGeneDB ID | Lch-Mir-26-P1 |
|---|---|
| Family name | MIR-26 (all species) |
| Seed | UCAAGUA |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-26-P2 Lch-Mir-26-P4 |
| Orthologues | Aca-Mir-26-P1 Ami-Mir-26-P1 Bta-Mir-26-P1 Cfa-Mir-26-P1 Cja-Mir-26-P1 Cli-Mir-26-P1 Cmi-Mir-26-P1 Cpi-Mir-26-P1 Cpo-Mir-26-P1 Dno-Mir-26-P1 Dre-Mir-26-P1a Dre-Mir-26-P1b Eca-Mir-26-P1 Ete-Mir-26-P1 Gga-Mir-26-P1 Gja-Mir-26-P1 Gmo-Mir-26-P1a Gmo-Mir-26-P1b Hsa-Mir-26-P1 Laf-Mir-26-P1 Loc-Mir-26-P1 Mal-Mir-26-P1a Mal-Mir-26-P1b Mdo-Mir-26-P1 Mml-Mir-26-P1 Mmr-Mir-26-P1 Mmu-Mir-26-P1 Mun-Mir-26-P1 Neu-Mir-26-P1 Oan-Mir-26-P1 Ocu-Mir-26-P1 Pab-Mir-26-P1 Pbv-Mir-26-P1 Pma-Mir-26-o1 Rno-Mir-26-P1 Sha-Mir-26-P1 Spt-Mir-26-P1 Sto-Mir-26-P1 Tgu-Mir-26-P1 Tni-Mir-26-P1a Tni-Mir-26-P1b Xla-Mir-26-P1c Xla-Mir-26-P1d Xtr-Mir-26-P1 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH129281.1: 50980-51040 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | CAUCACAGAACAGAAGCAGCUGAGACCUGGUUCAAGUAGUCCAGGAUAGGCUGUGAGUUUUAGAAUUAGCCUGUUCUUGAUUACUUGCACUAGGGGGCAGCAUUGCACCACUGAUGGCAUGGet precursor sequence |
| Structure | 10 20 30 40 50 CAUCACAGAACAGAAGCA--| AGA U C GUGAGUU GCUG CCUGGU CAAGUAGUC AGGAUAGGCU \ CGAC GGAUCA GUUCAUUAG UCUUGUCCGA U GUACGGUAGUCACCACGUUA^ GGG C U UUAAGAU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Lch-Mir-26-P1_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UUCAAGUAGUCCAGGAUAGGCU -22
Get sequence
|
| Star sequence | Lch-Mir-26-P1_3p* (predicted) |
| mirBase accession | None |
| Sequence |
39- CCUGUUCUUGAUUACUUGCACU -61
Get sequence
|
