Mir-26-P1a

MirGeneDB ID

Dre-Mir-26-P1a

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-26a-3

Paralogues

Dre-Mir-26-P1b Dre-Mir-26-P2a Dre-Mir-26-P4

Orthologues

Aca-Mir-26-P1 Ami-Mir-26-P1 Bta-Mir-26-P1 Cfa-Mir-26-P1 Cja-Mir-26-P1 Cli-Mir-26-P1 Cmi-Mir-26-P1 Cpi-Mir-26-P1 Cpo-Mir-26-P1 Dno-Mir-26-P1 Eca-Mir-26-P1 Ete-Mir-26-P1 Gga-Mir-26-P1 Gja-Mir-26-P1 Gmo-Mir-26-P1a Hsa-Mir-26-P1 Laf-Mir-26-P1 Lch-Mir-26-P1 Loc-Mir-26-P1 Mal-Mir-26-P1a Mdo-Mir-26-P1 Mml-Mir-26-P1 Mmr-Mir-26-P1 Mmu-Mir-26-P1 Mun-Mir-26-P1 Neu-Mir-26-P1 Oan-Mir-26-P1 Ocu-Mir-26-P1 Pab-Mir-26-P1 Pbv-Mir-26-P1 Pma-Mir-26-o1 Rno-Mir-26-P1 Sha-Mir-26-P1 Spt-Mir-26-P1 Sto-Mir-26-P1 Tgu-Mir-26-P1 Tni-Mir-26-P1a Xtr-Mir-26-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr24: 20470992-20471052 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUACUGAGUCAGUGUGUGGCUGCAACCUGGUUCAAGUAAUCCAGGAUAGGCUUUGUGGACUAGGGUUGGCCUGUUCUUGGUUACUUGCACUGGGUUGCAGCUACUAAACAACUAAGAAGAU

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Structure

        10          20        30        40        50          
AUACUGAGUCAGUGUGU--|         UG  U         C          UUGUGGA 
                   GGCUGCAACC  GU CAAGUAAUC AGGAUAGGCU       \
                   UCGACGUUGG  CA GUUCAUUGG UCUUGUCCGG       C
UAGAAGAAUCAACAAAUCA^         GU  C         U          UUGGGAU 
 .       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-26-P1a_5p

mirBase accession

MIMAT0001794

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

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Proposed targets

TargetScanFish: dre-miR-26a

Star sequence

Dre-Mir-26-P1a_3p*

mirBase accession

None

Sequence

39- CCUGUUCUUGGUUACUUGCACU -61

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