Mir-26-P1

MirGeneDB ID

Mdo-Mir-26-P1

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-26-3

Paralogues

Mdo-Mir-26-P2 Mdo-Mir-26-P4

Orthologues

Aca-Mir-26-P1 Ami-Mir-26-P1 Bta-Mir-26-P1 Cfa-Mir-26-P1 Cli-Mir-26-P1 Cmi-Mir-26-P1 Cpi-Mir-26-P1 Cpo-Mir-26-P1 Dno-Mir-26-P1 Dre-Mir-26-P1a Dre-Mir-26-P1b Ete-Mir-26-P1 Gga-Mir-26-P1 Gja-Mir-26-P1 Gmo-Mir-26-P1a Gmo-Mir-26-P1b Hsa-Mir-26-P1 Lch-Mir-26-P1 Loc-Mir-26-P1 Mal-Mir-26-P1a Mal-Mir-26-P1b Mml-Mir-26-P1 Mmu-Mir-26-P1 Mun-Mir-26-P1 Oan-Mir-26-P1 Ocu-Mir-26-P1 Pbv-Mir-26-P1 Pma-Mir-26-o1 Rno-Mir-26-P1 Sha-Mir-26-P1 Spt-Mir-26-P1 Sto-Mir-26-P1 Tgu-Mir-26-P1 Tni-Mir-26-P1a Tni-Mir-26-P1b Xla-Mir-26-P1c Xla-Mir-26-P1d Xtr-Mir-26-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(monDom5_add)

Un: 48296701-48296761 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGGCCUCUCCUGGAAAAGGCUGUGACCUGGUUCAAGUAAUCCAGGAUAGGCUGGACCCAUUCUCAUCGGCCUAUUCUCGACUACUUGCACUCGGGCGCGGCCACGCGAAGCGCAGCGACGG

Get precursor sequence

Structure

        10          20         30        40        50          
AGGCCUCUCCUGGAAAA--|      A    -  U      A  C          GGACCCA 
                   GGCUGUG CCUG GU CAAGUA UC AGGAUAGGCU       \
                   CCGGCGC GGGC CA GUUCAU AG UCUUAUCCGG       U
GGCAGCGACGCGAAGCGCA^      -    U  C      C  C          CUACUCU 
 .       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Ce	He	Ki	Te

Mature sequence

Mdo-Mir-26-P1_5p

mirBase accession

MIMAT0012736

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

Get sequence

Proposed targets

TargetScanVert: mdo-miR-26-5p

Star sequence

Mdo-Mir-26-P1_3p*

mirBase accession

MIMAT0031030

Sequence

39- CCUAUUCUCGACUACUUGCACU -61

Get sequence

Proposed targets

TargetScanVert: mdo-miR-26-3-3p