Mir-26-P1

MirGeneDB ID

Rno-Mir-26-P1

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-26a

Paralogues

Rno-Mir-26-P2 Rno-Mir-26-P4

Orthologues

Aca-Mir-26-P1 Ami-Mir-26-P1 Bta-Mir-26-P1 Cfa-Mir-26-P1 Cja-Mir-26-P1 Cli-Mir-26-P1 Cmi-Mir-26-P1 Cpi-Mir-26-P1 Cpo-Mir-26-P1 Dno-Mir-26-P1 Dre-Mir-26-P1a Dre-Mir-26-P1b Eca-Mir-26-P1 Ete-Mir-26-P1 Gga-Mir-26-P1 Gja-Mir-26-P1 Gmo-Mir-26-P1a Gmo-Mir-26-P1b Hsa-Mir-26-P1 Laf-Mir-26-P1 Lch-Mir-26-P1 Loc-Mir-26-P1 Mal-Mir-26-P1a Mal-Mir-26-P1b Mdo-Mir-26-P1 Mml-Mir-26-P1 Mmr-Mir-26-P1 Mmu-Mir-26-P1 Mun-Mir-26-P1 Neu-Mir-26-P1 Oan-Mir-26-P1 Ocu-Mir-26-P1 Pab-Mir-26-P1 Pbv-Mir-26-P1 Pma-Mir-26-o1 Sha-Mir-26-P1 Spt-Mir-26-P1 Sto-Mir-26-P1 Tgu-Mir-26-P1 Tni-Mir-26-P1a Tni-Mir-26-P1b Xla-Mir-26-P1c Xla-Mir-26-P1d Xtr-Mir-26-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr8: 127714456-127714516 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCCAAGGCCCUGGCGAAGGCCGUGGCCUUGUUCAAGUAAUCCAGGAUAGGCUGUGCAGGUCCCAAGGGGCCUAUUCUUGGUUACUUGCACGGGGACGCGGGCCUGGACGCCUGCAUCCGGG

Get precursor sequence

Structure

        10          20        30        40        50          
GCCAAGGCCCUGGCGAA-  -|    G      U         C          GUGCAGG 
                  GG CCGUG CCUUGU CAAGUAAUC AGGAUAGGCU       \
                  CC GGCGC GGGGCA GUUCAUUGG UCUUAUCCGG       U
GGGCCUACGUCCGCAGGU  G^    A      C         U          GGAACCC 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-26-P1_5p

mirBase accession

MIMAT0000796

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

Get sequence

Proposed targets

microrna.org: MIMAT0000796
TargetScanVert: rno-miR-26a-5p
miRDB: MIMAT0000796

Star sequence

Rno-Mir-26-P1_3p*

mirBase accession

MIMAT0017100

Sequence

39- CCUAUUCUUGGUUACUUGCACG -61

Get sequence

Proposed targets

TargetScanVert: rno-miR-26a-3p
miRDB: MIMAT0017100