MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-26-P1

Family name MIR-26 (all species)
Seed UCAAGUA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-26a
Paralogues Rno-Mir-26-P2  Rno-Mir-26-P4 
Orthologues Aca-Mir-26-P1  Ami-Mir-26-P1  Bta-Mir-26-P1  Cfa-Mir-26-P1  Cli-Mir-26-P1  Cmi-Mir-26-P1  Cpi-Mir-26-P1  Cpo-Mir-26-P1  Dno-Mir-26-P1  Dre-Mir-26-P1a  Dre-Mir-26-P1b  Ete-Mir-26-P1  Gga-Mir-26-P1  Gja-Mir-26-P1  Gmo-Mir-26-P1a  Gmo-Mir-26-P1b  Hsa-Mir-26-P1  Lch-Mir-26-P1  Loc-Mir-26-P1  Mal-Mir-26-P1a  Mal-Mir-26-P1b  Mdo-Mir-26-P1  Mml-Mir-26-P1  Mmu-Mir-26-P1  Mun-Mir-26-P1  Oan-Mir-26-P1  Ocu-Mir-26-P1  Pbv-Mir-26-P1  Pma-Mir-26-o1  Sha-Mir-26-P1  Spt-Mir-26-P1  Sto-Mir-26-P1  Tgu-Mir-26-P1  Tni-Mir-26-P1a  Tni-Mir-26-P1b  Xla-Mir-26-P1c  Xla-Mir-26-P1d  Xtr-Mir-26-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)
chr8: 127714456-127714516 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCAAGGCCCUGGCGAAGGCCGUGGCCUUGUUCAAGUAAUCCAGGAUAGGCUGUGCAGGUCCCAAGGGGCCUAUUCUUGGUUACUUGCACGGGGACGCGGGCCUGGACGCCUGCAUCCGGG
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Structure
        10          20        30        40        50          
GCCAAGGCCCUGGCGAA-  -|    G      U         C          GUGCAGG 
                  GG CCGUG CCUUGU CAAGUAAUC AGGAUAGGCU       \
                  CC GGCGC GGGGCA GUUCAUUGG UCUUAUCCGG       U
GGGCCUACGUCCGCAGGU  G^    A      C         U          GGAACCC 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-26-P1_5p

mirBase accessionMIMAT0000796
Sequence
0- UUCAAGUAAUCCAGGAUAGGCU -22
Get sequence
Proposed targets microrna.org: MIMAT0000796
TargetScanVert: rno-miR-26a-5p
miRDB: MIMAT0000796
Star sequence

Rno-Mir-26-P1_3p*

mirBase accessionMIMAT0017100
Sequence
39- CCUAUUCUUGGUUACUUGCACG -61
Get sequence
Proposed targets TargetScanVert: rno-miR-26a-3p
miRDB: MIMAT0017100