Mir-26-P1

MirGeneDB ID

Mmu-Mir-26-P1

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-26a-1

Paralogues

Mmu-Mir-26-P2 Mmu-Mir-26-P4

Orthologues

Aca-Mir-26-P1 Ami-Mir-26-P1 Bta-Mir-26-P1 Cfa-Mir-26-P1 Cja-Mir-26-P1 Cli-Mir-26-P1 Cmi-Mir-26-P1 Cpi-Mir-26-P1 Cpo-Mir-26-P1 Dno-Mir-26-P1 Dre-Mir-26-P1a Dre-Mir-26-P1b Eca-Mir-26-P1 Ete-Mir-26-P1 Gga-Mir-26-P1 Gja-Mir-26-P1 Gmo-Mir-26-P1a Gmo-Mir-26-P1b Hsa-Mir-26-P1 Laf-Mir-26-P1 Lch-Mir-26-P1 Loc-Mir-26-P1 Mal-Mir-26-P1a Mal-Mir-26-P1b Mdo-Mir-26-P1 Mml-Mir-26-P1 Mmr-Mir-26-P1 Mun-Mir-26-P1 Neu-Mir-26-P1 Oan-Mir-26-P1 Ocu-Mir-26-P1 Pab-Mir-26-P1 Pbv-Mir-26-P1 Pma-Mir-26-o1 Rno-Mir-26-P1 Sha-Mir-26-P1 Spt-Mir-26-P1 Sto-Mir-26-P1 Tgu-Mir-26-P1 Tni-Mir-26-P1a Tni-Mir-26-P1b Xla-Mir-26-P1c Xla-Mir-26-P1d Xtr-Mir-26-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chr9: 119031811-119031871 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACCGAGGCCCUGGCGAAGGCCGUGGCCUCGUUCAAGUAAUCCAGGAUAGGCUGUGCAGGUCCCAAGGGGCCUAUUCUUGGUUACUUGCACGGGGACGCGGGCCUGGACGCCGGCAUCUGGG

Get precursor sequence

Structure

        10          20        30        40        50          
ACCGAGGCCCUGGCGAA-  -|    G      U         C          GUGCAGG 
                  GG CCGUG CCUCGU CAAGUAAUC AGGAUAGGCU       \
                  CC GGCGC GGGGCA GUUCAUUGG UCUUAUCCGG       U
GGGUCUACGGCCGCAGGU  G^    A      C         U          GGAACCC 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Mature sequence

Mmu-Mir-26-P1_5p

mirBase accession

MIMAT0000533

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

Get sequence

Proposed targets

microrna.org: MIMAT0000533
TargetScanVert: mmu-miR-26a-5p
miRDB: MIMAT0000533

Star sequence

Mmu-Mir-26-P1_3p*

mirBase accession

MIMAT0017020

Sequence

39- CCUAUUCUUGGUUACUUGCACG -61

Get sequence

Proposed targets

TargetScanVert: mmu-miR-26a-1-3p
miRDB: MIMAT0017020