Mir-26-P2a

MirGeneDB ID

Dre-Mir-26-P2a

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-26a-1

Paralogues

Dre-Mir-26-P1a Dre-Mir-26-P1b Dre-Mir-26-P4

Orthologues

Aca-Mir-26-P2 Bta-Mir-26-P2 Cfa-Mir-26-P2 Cja-Mir-26-P2 Cli-Mir-26-P2 Cpi-Mir-26-P2 Cpo-Mir-26-P2 Dno-Mir-26-P2 Eca-Mir-26-P2 Ete-Mir-26-P2 Gga-Mir-26-P2 Gja-Mir-26-P2 Gmo-Mir-26-P2a Hsa-Mir-26-P2 Laf-Mir-26-P2 Lch-Mir-26-P2 Loc-Mir-26-P2 Mal-Mir-26-P2a Mdo-Mir-26-P2 Mml-Mir-26-P2 Mmr-Mir-26-P2 Mmu-Mir-26-P2 Mun-Mir-26-P2 Neu-Mir-26-P2 Oan-Mir-26-P2 Ocu-Mir-26-P2 Pab-Mir-26-P2 Pbv-Mir-26-P2 Pma-Mir-26-o2 Rno-Mir-26-P2 Sha-Mir-26-P2 Spt-Mir-26-P2 Sto-Mir-26-P2 Tgu-Mir-26-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr9: 41733543-41733602 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGACAUCUGACAGACAAGGCUUUGGCCUGGUUCAAGUAAUCCAGGAUAGGCUUGUGAUGUCCGGAAAGCCUAUUCGGGAUGACUUGGUUCAGGAAUGAGACCACCAGCAUCAUAAACGAG

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Structure

        10          20        30        40        50         
GGACAUCUGACAGACAA-  -|  UGG     UU     A    A         UGUGAU 
                  GG CUU   CCUGG  CAAGU AUCC GGAUAGGCU      G
                  CC GAG   GGACU  GUUCA UAGG CUUAUCCGA      U
GAGCAAAUACUACGACCA  A^  UAA     UG     G    G         AAGGCC 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-26-P2a_5p

mirBase accession

MIMAT0001794

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

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Proposed targets

TargetScanFish: dre-miR-26a

Star sequence

Dre-Mir-26-P2a_3p*

mirBase accession

MIMAT0031947

Sequence

38- CCUAUUCGGGAUGACUUGGUUC -60

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