Mir-26-P2

MirGeneDB ID

Tgu-Mir-26-P2

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

Zebra finch (Taeniopygia guttata)

MiRBase ID

Paralogues

Tgu-Mir-26-P1 Tgu-Mir-26-P4

Orthologues

Aca-Mir-26-P2 Bta-Mir-26-P2 Cfa-Mir-26-P2 Cja-Mir-26-P2 Cli-Mir-26-P2 Cpi-Mir-26-P2 Cpo-Mir-26-P2 Dno-Mir-26-P2 Dre-Mir-26-P2a Eca-Mir-26-P2 Ete-Mir-26-P2 Gga-Mir-26-P2 Gja-Mir-26-P2 Gmo-Mir-26-P2a Gmo-Mir-26-P2b Hsa-Mir-26-P2 Laf-Mir-26-P2 Lch-Mir-26-P2 Loc-Mir-26-P2 Mal-Mir-26-P2a Mal-Mir-26-P2b Mdo-Mir-26-P2 Mml-Mir-26-P2 Mmr-Mir-26-P2 Mmu-Mir-26-P2 Mun-Mir-26-P2 Neu-Mir-26-P2 Oan-Mir-26-P2 Ocu-Mir-26-P2 Pab-Mir-26-P2 Pbv-Mir-26-P2 Pma-Mir-26-o2 Rno-Mir-26-P2 Sha-Mir-26-P2 Spt-Mir-26-P2 Sto-Mir-26-P2 Tni-Mir-26-P2b Xla-Mir-26-P2e Xla-Mir-26-P2f Xtr-Mir-26-P2c Xtr-Mir-26-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(TaeGut1_add)

7: 9895589-9895649 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGCUGCCCUCCUGCAGUGGCCAGCCCCAGUUUCAAGUAAUCCAGGAUAGGCUGUGGUCUGGGCAGUCAGCCUGUUCUCGGUUACUUGGCUCUGGAGCCGGCCAGACACUUCACCCUGGACA

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Structure

        10          20        30        40        50          
UGCUGCCCUCCUGCAGU--|   A  C    UU          C          GUGGUCU 
                   GGCC GC CCAG  UCAAGUAAUC AGGAUAGGCU       \
                   CCGG CG GGUC  GGUUCAUUGG UCUUGUCCGA       G
ACAGGUCCCACUUCACAGA^   C  A    UC          C          CUGACGG 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Fe	Fe	Fe	Fe	Ma	Ma	Ma	Ma

Mature sequence

Tgu-Mir-26-P2_5p

mirBase accession

None

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

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Star sequence

Tgu-Mir-26-P2_3p*

mirBase accession

None

Sequence

39- CCUGUUCUCGGUUACUUGGCUC -61

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