Mir-26-P2e

MirGeneDB ID

Xla-Mir-26-P2e

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-26-2

Paralogues

Xla-Mir-26-P1c Xla-Mir-26-P1d Xla-Mir-26-P2f Xla-Mir-26-P4a Xla-Mir-26-P4b

Orthologues

Aca-Mir-26-P2 Bta-Mir-26-P2 Cfa-Mir-26-P2 Cja-Mir-26-P2 Cli-Mir-26-P2 Cpi-Mir-26-P2 Cpo-Mir-26-P2 Dno-Mir-26-P2 Eca-Mir-26-P2 Ete-Mir-26-P2 Gga-Mir-26-P2 Gja-Mir-26-P2 Hsa-Mir-26-P2 Laf-Mir-26-P2 Lch-Mir-26-P2 Loc-Mir-26-P2 Mdo-Mir-26-P2 Mml-Mir-26-P2 Mmr-Mir-26-P2 Mmu-Mir-26-P2 Mun-Mir-26-P2 Neu-Mir-26-P2 Oan-Mir-26-P2 Ocu-Mir-26-P2 Pab-Mir-26-P2 Pbv-Mir-26-P2 Pma-Mir-26-o2 Rno-Mir-26-P2 Sha-Mir-26-P2 Spt-Mir-26-P2 Sto-Mir-26-P2 Tgu-Mir-26-P2

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030740.1: 52888537-52888597 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCAACGAGGAAUCCUGAUUGGGCGCUAGCUUCAAGUAAUCCAGGAUAGGCUGUAAUGCCUCCUUUCAGCCUAUUCUCGAUUACUUGGGACCAGAGCCAAUCACUUUCAGCGAGUGAUGCA

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Structure

        10        20          30        40        50          
AGCAACGAGGAAUCCUGAUUG--|  G  AGC           C          GUAAUGC 
                       GGC CU   UUCAAGUAAUC AGGAUAGGCU       \
                       CCG GA   GGGUUCAUUAG UCUUAUCCGA       C
ACGUAGUGAGCGACUUUCACUAA^  A  CCA           C          CUUUCCU 
 .       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Mature sequence

Xla-Mir-26-P2e_5p

mirBase accession

MIMAT0046555

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

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Star sequence

Xla-Mir-26-P2e_3p*

mirBase accession

MIMAT0046557

Sequence

39- CCUAUUCUCGAUUACUUGGGAC -61

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