MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-26-P2

Family name MIR-26 (all species)
Seed UCAAGUA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-26-P1  Loc-Mir-26-P4 
Orthologues Aca-Mir-26-P2  Bta-Mir-26-P2  Cfa-Mir-26-P2  Cja-Mir-26-P2  Cli-Mir-26-P2  Cpi-Mir-26-P2  Cpo-Mir-26-P2  Dno-Mir-26-P2  Dre-Mir-26-P2a  Eca-Mir-26-P2  Ete-Mir-26-P2  Gga-Mir-26-P2  Gja-Mir-26-P2  Gmo-Mir-26-P2a  Gmo-Mir-26-P2b  Hsa-Mir-26-P2  Laf-Mir-26-P2  Lch-Mir-26-P2  Mal-Mir-26-P2a  Mal-Mir-26-P2b  Mdo-Mir-26-P2  Mml-Mir-26-P2  Mmr-Mir-26-P2  Mmu-Mir-26-P2  Mun-Mir-26-P2  Neu-Mir-26-P2  Oan-Mir-26-P2  Ocu-Mir-26-P2  Pab-Mir-26-P2  Pbv-Mir-26-P2  Pma-Mir-26-o2  Rno-Mir-26-P2  Sha-Mir-26-P2  Spt-Mir-26-P2  Sto-Mir-26-P2  Tgu-Mir-26-P2  Tni-Mir-26-P2b  Xla-Mir-26-P2e  Xla-Mir-26-P2f  Xtr-Mir-26-P2c  Xtr-Mir-26-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG12: 21628472-21628532 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GACACCUUGUAGUCUUAGGCCUGUGCCUGUUUCAAGUAAUCCAGGAUAGGCUUGUUCAAGCUUGGAAGGCCUAUUCUGGAUGACUUGGUUCAGGAGCAAGGCCAAUAGCUACAAGUUCAUG
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Structure
        10         20         30        40        50          
GACACCUUGUAGUCUUA-    -|  G    UU      A              UGUUCAA 
                  GGCC UGU CCUG  UCAAGU AUCCAGGAUAGGCU       \
                  CCGG ACG GGAC  GGUUCA UAGGUCUUAUCCGG       G
GUACUUGAACAUCGAUAA    A^  A    UU      G              AAGGUUC 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-26-P2_5p
mirBase accessionNone
Sequence 
0- UUCAAGUAAUCCAGGAUAGGCU -22
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Star sequence

Loc-Mir-26-P2_3p*
mirBase accessionNone
Sequence 
39- CCUAUUCUGGAUGACUUGGUUC -61
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