MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-26-P2

Family name MIR-26 (all species)
Seed UCAAGUA
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-26-2
Paralogues Cli-Mir-26-P1 
Orthologues Aca-Mir-26-P2  Bta-Mir-26-P2  Cfa-Mir-26-P2  Cja-Mir-26-P2  Cpi-Mir-26-P2  Cpo-Mir-26-P2  Dno-Mir-26-P2  Dre-Mir-26-P2a  Eca-Mir-26-P2  Ete-Mir-26-P2  Gga-Mir-26-P2  Gja-Mir-26-P2  Gmo-Mir-26-P2a  Gmo-Mir-26-P2b  Hsa-Mir-26-P2  Laf-Mir-26-P2  Lch-Mir-26-P2  Loc-Mir-26-P2  Mal-Mir-26-P2a  Mal-Mir-26-P2b  Mdo-Mir-26-P2  Mml-Mir-26-P2  Mmr-Mir-26-P2  Mmu-Mir-26-P2  Mun-Mir-26-P2  Neu-Mir-26-P2  Oan-Mir-26-P2  Ocu-Mir-26-P2  Pab-Mir-26-P2  Pbv-Mir-26-P2  Pma-Mir-26-o2  Rno-Mir-26-P2  Sha-Mir-26-P2  Spt-Mir-26-P2  Sto-Mir-26-P2  Tgu-Mir-26-P2  Tni-Mir-26-P2b  Xla-Mir-26-P2e  Xla-Mir-26-P2f  Xtr-Mir-26-P2c  Xtr-Mir-26-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)		 scaffold32: 1151298-1151358 [+]
Clustered miRNAs
(< 50kb from Mir-26-P2)		 Mir-9616 scaffold32: 1124437-1124505 [-]
Mir-26-P2 scaffold32: 1151298-1151358 [+]
Precursor
(pre-Mir +30nt flank)
CGGUGUCCUCCUGCAGUGGCCGGCCCCAGGUUCAAGUAAUCCAGGAUAGGCUGUGAUCUGGGCAGUCAGCCUGUUCUUGGUUACUUGGCUCUGGAGCUGGCCAGAUGCUUCACUCCGGAUG
Get precursor sequence
Structure
        10          20        30        40        50          
CGGUGUCCUCCUGCAGU--|      C     UU         C          GUGAUCU 
                   GGCCGGC CCAGG  CAAGUAAUC AGGAUAGGCU       \
                   CCGGUCG GGUCU  GUUCAUUGG UCUUGUCCGA       G
GUAGGCCUCACUUCGUAGA^      A     CG         U          CUGACGG 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-26-P2_5p
mirBase accessionMIMAT0038442
Sequence 
0- UUCAAGUAAUCCAGGAUAGGCU -22
Get sequence
Star sequence

Cli-Mir-26-P2_3p*
mirBase accessionMIMAT0038444
Sequence 
39- CCUGUUCUUGGUUACUUGGCUC -61
Get sequence