Mir-26-o2

MirGeneDB ID

Pma-Mir-26-o2

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-26a-2

Paralogues

Pma-Mir-26-o1 Pma-Mir-26-o3 Pma-Mir-26-o4

Orthologues

Aca-Mir-26-P2 Bta-Mir-26-P2 Cfa-Mir-26-P2 Cja-Mir-26-P2 Cli-Mir-26-P2 Cpi-Mir-26-P2 Cpo-Mir-26-P2 Dno-Mir-26-P2 Dre-Mir-26-P2a Eca-Mir-26-P2 Ete-Mir-26-P2 Gga-Mir-26-P2 Gja-Mir-26-P2 Gmo-Mir-26-P2a Gmo-Mir-26-P2b Hsa-Mir-26-P2 Laf-Mir-26-P2 Lch-Mir-26-P2 Loc-Mir-26-P2 Mal-Mir-26-P2a Mal-Mir-26-P2b Mdo-Mir-26-P2 Mml-Mir-26-P2 Mmr-Mir-26-P2 Mmu-Mir-26-P2 Mun-Mir-26-P2 Neu-Mir-26-P2 Oan-Mir-26-P2 Ocu-Mir-26-P2 Pab-Mir-26-P2 Pbv-Mir-26-P2 Rno-Mir-26-P2 Sha-Mir-26-P2 Spt-Mir-26-P2 Sto-Mir-26-P2 Tgu-Mir-26-P2 Tni-Mir-26-P2b Xla-Mir-26-P2e Xla-Mir-26-P2f Xtr-Mir-26-P2c Xtr-Mir-26-P2d

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046070.1: 25665244-25665301 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGGAGGUAAAGUCUUUAGGCUGACACCCUGUUCAAGUAAUCCAGGAUAGGCUGUGUUACUCGUGGGCCUUUCCUCGGUUGCUUGAUCCGGGUGUAGUCUGCAAACGUCUUGUGUUCUA

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Structure

        10           20        30        40        50        
UGGAGGUAAAGUCUUUA---|    A     UGU          C    U     GUGUU 
                    GGCUG CACCC   UCAAGUAAUC AGGA AGGCU     A
                    CUGAU GUGGG   AGUUCGUUGG UCCU UCCGG     C
AUCUUGUGUUCUGCAAACGU^    -     CCU          C    U     GUGCU 
      110       100         90        80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-26-o2_5p

mirBase accession

MIMAT0019408

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

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Star sequence

Pma-Mir-26-o2_3p*

mirBase accession

MIMAT0019410

Sequence

36- CCUUUCCUCGGUUGCUUGAUCC -58

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