Mir-26-P4

MirGeneDB ID

Dre-Mir-26-P4

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-26b

Paralogues

Dre-Mir-26-P1a Dre-Mir-26-P1b Dre-Mir-26-P2a

Orthologues

Aca-Mir-26-P4 Ami-Mir-26-P4 Bta-Mir-26-P4 Cfa-Mir-26-P4 Cja-Mir-26-P4 Cpi-Mir-26-P4 Cpo-Mir-26-P4 Dno-Mir-26-P4 Eca-Mir-26-P4 Ete-Mir-26-P4 Gga-Mir-26-P4 Gja-Mir-26-P4 Gmo-Mir-26-P4 Hsa-Mir-26-P4 Laf-Mir-26-P4 Lch-Mir-26-P4 Loc-Mir-26-P4 Mal-Mir-26-P4 Mdo-Mir-26-P4 Mml-Mir-26-P4 Mmr-Mir-26-P4 Mmu-Mir-26-P4 Mun-Mir-26-P4 Neu-Mir-26-P4 Oan-Mir-26-P4 Ocu-Mir-26-P4 Pab-Mir-26-P4 Pbv-Mir-26-P4 Pma-Mir-26-o4 Rno-Mir-26-P4 Sha-Mir-26-P4 Spt-Mir-26-P4 Sto-Mir-26-P4 Tgu-Mir-26-P4 Tni-Mir-26-P4 Xla-Mir-26-P4a Xla-Mir-26-P4b Xtr-Mir-26-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr23: 24675224-24675284 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACAGGAAAUCUGCAUUUGGCCUUUGCCUGGUUCAAGUAAUCCAGGAUAGGUUAGUUCCCACUAGUACGGCCUAUUCUUGGUUACUUGUUUCAGGAGGAGGCUACGAGCAACAGCACUACAG

Get precursor sequence

Structure

        10          20        30        40        50          
ACAGGAAAUCUGCAUUU--|     UG     UU         C          AGUUCCC 
                   GGCCUU  CCUGG  CAAGUAAUC AGGAUAGGUU       \
                   UCGGAG  GGACU  GUUCAUUGG UCUUAUCCGG       A
GACAUCACGACAACGAGCA^     GA     UU         U          CAUGAUC 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-26-P4_5p

mirBase accession

MIMAT0001795

Sequence

0- UUCAAGUAAUCCAGGAUAGGUU -22

Get sequence

Proposed targets

TargetScanFish: dre-miR-26b

Star sequence

Dre-Mir-26-P4_3p*

mirBase accession

None

Sequence

39- CCUAUUCUUGGUUACUUGUUUC -61

Get sequence