Mir-26-P4

MirGeneDB ID

Pbv-Mir-26-P4

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

Burmese python (Python bivittatus)

MiRBase ID

pbv-mir-26-3

Paralogues

Pbv-Mir-26-P1 Pbv-Mir-26-P2

Orthologues

Aca-Mir-26-P4 Ami-Mir-26-P4 Bta-Mir-26-P4 Cfa-Mir-26-P4 Cja-Mir-26-P4 Cpi-Mir-26-P4 Cpo-Mir-26-P4 Dno-Mir-26-P4 Dre-Mir-26-P4 Eca-Mir-26-P4 Ete-Mir-26-P4 Gga-Mir-26-P4 Gja-Mir-26-P4 Gmo-Mir-26-P4 Hsa-Mir-26-P4 Laf-Mir-26-P4 Lch-Mir-26-P4 Loc-Mir-26-P4 Mal-Mir-26-P4 Mdo-Mir-26-P4 Mml-Mir-26-P4 Mmr-Mir-26-P4 Mmu-Mir-26-P4 Mun-Mir-26-P4 Neu-Mir-26-P4 Oan-Mir-26-P4 Ocu-Mir-26-P4 Pab-Mir-26-P4 Pma-Mir-26-o4 Rno-Mir-26-P4 Sha-Mir-26-P4 Spt-Mir-26-P4 Sto-Mir-26-P4 Tgu-Mir-26-P4 Tni-Mir-26-P4 Xla-Mir-26-P4a Xla-Mir-26-P4b Xtr-Mir-26-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000186305.2_Python_molurus_bivittatus)

KE955192.1: 47260-47320 [-]

Precursor
(pre-Mir +30nt flank)

GAAGGCCGUGCAGCGAAGGUCUCAGCCUGGUUCAAGUAAUCCAGGAUAGGCUGUUACCAGGCAACACGGCCUAUUCUUGAUUACUUGUUUCAGGAGGCGGCUUCUUGCCACAUAGGAAUGA

Get precursor sequence

Structure

        10          20        30        40        50          
GAAGGCCGUGCAGCGAA--|   UCAG     UU         C          GUUACCA 
                   GGUC    CCUGG  CAAGUAAUC AGGAUAGGCU       \
                   UCGG    GGACU  GUUCAUUAG UCUUAUCCGG       G
AGUAAGGAUACACCGUUCU^   CGGA     UU         U          CACAACG 
 .       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Pbv-Mir-26-P4_5p

mirBase accession

MIMAT0038858

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

Get sequence

Star sequence

Pbv-Mir-26-P4_3p*

mirBase accession

MIMAT0038860

Sequence

39- CCUAUUCUUGAUUACUUGUUUC -61

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