MirGeneDB ID | Gga-Mir-26-P4 |
Family name |
MIR-26 (all species) |
Seed |
UCAAGUA |
Species |
Chicken (Gallus gallus) |
MiRBase ID |
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Paralogues |
Gga-Mir-26-P1
Gga-Mir-26-P2
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Orthologues |
Aca-Mir-26-P4
Ami-Mir-26-P4
Bta-Mir-26-P4
Cfa-Mir-26-P4
Cja-Mir-26-P4
Cpi-Mir-26-P4
Cpo-Mir-26-P4
Dno-Mir-26-P4
Dre-Mir-26-P4
Eca-Mir-26-P4
Ete-Mir-26-P4
Gja-Mir-26-P4
Gmo-Mir-26-P4
Hsa-Mir-26-P4
Laf-Mir-26-P4
Lch-Mir-26-P4
Loc-Mir-26-P4
Mal-Mir-26-P4
Mdo-Mir-26-P4
Mml-Mir-26-P4
Mmr-Mir-26-P4
Mmu-Mir-26-P4
Mun-Mir-26-P4
Neu-Mir-26-P4
Oan-Mir-26-P4
Ocu-Mir-26-P4
Pab-Mir-26-P4
Pbv-Mir-26-P4
Pma-Mir-26-o4
Rno-Mir-26-P4
Sha-Mir-26-P4
Spt-Mir-26-P4
Sto-Mir-26-P4
Tgu-Mir-26-P4
Tni-Mir-26-P4
Xla-Mir-26-P4a
Xla-Mir-26-P4b
Xtr-Mir-26-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
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Genome context (Gallus_gallus.GRCg6a) |
33: 4891210-4891266 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGAGGGGGGGACCCGGGGGGCGCGGCCCGCUUCAAGUAAUCCAGGAUAGGCUGUGCCCCCCCCGGCCUGUCCUCCGUUACUUGGGGUGGGACGCGGCCAGGCGGCCAUGUGUGGGGG
Get precursor sequence
|
Structure | 10 20 30 40 50
GGAGGGGGGGACCCGGG--| G G CC GUGCC
GG CGCG CCCGCUUCAAGUAAU AGGAUAGGCU \
CC GCGC GGGUGGGGUUCAUUG UCCUGUCCGG C
GGGGGUGUGUACCGGCGGA^ G A CC CCCCC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
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Ad |
Ad |
Ad |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Gg |
He |
He |
Hy |
Hy |
Ki |
Ki |
Li |
Li |
Lu |
Lu |
Ov |
Pr |
Pr |
Sc |
Sc |
Sp |
Sp |
Te |
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Mature sequence |
Gga-Mir-26-P4_5p |
mirBase accession | None |
Sequence |
0- UUCAAGUAAUCCAGGAUAGGCU -22
Get sequence
|
Star sequence |
Gga-Mir-26-P4_3p* |
mirBase accession | None |
Sequence |
35- CCUGUCCUCCGUUACUUGGGGU -57
Get sequence
|