Mir-26-P4

MirGeneDB ID

Ami-Mir-26-P4

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-26-2

Paralogues

Ami-Mir-26-P1

Orthologues

Aca-Mir-26-P4 Bta-Mir-26-P4 Cfa-Mir-26-P4 Cja-Mir-26-P4 Cpi-Mir-26-P4 Cpo-Mir-26-P4 Dno-Mir-26-P4 Dre-Mir-26-P4 Eca-Mir-26-P4 Ete-Mir-26-P4 Gga-Mir-26-P4 Gja-Mir-26-P4 Gmo-Mir-26-P4 Hsa-Mir-26-P4 Laf-Mir-26-P4 Lch-Mir-26-P4 Loc-Mir-26-P4 Mal-Mir-26-P4 Mdo-Mir-26-P4 Mml-Mir-26-P4 Mmr-Mir-26-P4 Mmu-Mir-26-P4 Mun-Mir-26-P4 Neu-Mir-26-P4 Oan-Mir-26-P4 Ocu-Mir-26-P4 Pab-Mir-26-P4 Pbv-Mir-26-P4 Pma-Mir-26-o4 Rno-Mir-26-P4 Sha-Mir-26-P4 Spt-Mir-26-P4 Sto-Mir-26-P4 Tgu-Mir-26-P4 Tni-Mir-26-P4 Xla-Mir-26-P4a Xla-Mir-26-P4b Xtr-Mir-26-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017714443.1: 114276-114335 [-] UCSC

Precursor
(pre-Mir +30nt flank)

CGGAGCAGGACCCAUGGGGUCACGGCCCGGUUCAAGUAAUCCAGGAUAGGCUGGUGCCAGGCCCGUGGCCUAUUCUCGAUUACUUGUCUCGGGACGUGGCUGCUGGCACGGCGACGCUGG

Get precursor sequence

Structure

        10          20        30        40        50         
CGGAGCAGGACCCAUGG--|      G     UU         C          GGUGCC 
                   GGUCACG CCCGG  CAAGUAAUC AGGAUAGGCU      A
                   UCGGUGC GGGCU  GUUCAUUAG UCUUAUCCGG      G
GGUCGCAGCGGCACGGUCG^      A     CU         C          UGCCCG 
.       110       100        90        80        70        60