MirGeneDB ID | Xtr-Mir-26-P4 |
Family name |
MIR-26 (all species) |
Seed |
UCAAGUA |
Species |
Tropical clawed frog (Xenopus tropicalis) |
MiRBase ID |
xtr-mir-26-1
|
Paralogues |
Xtr-Mir-26-P1
Xtr-Mir-26-P2c
Xtr-Mir-26-P2d
|
Orthologues |
Aca-Mir-26-P4
Ami-Mir-26-P4
Bta-Mir-26-P4
Cfa-Mir-26-P4
Cja-Mir-26-P4
Cpi-Mir-26-P4
Cpo-Mir-26-P4
Dno-Mir-26-P4
Dre-Mir-26-P4
Eca-Mir-26-P4
Ete-Mir-26-P4
Gga-Mir-26-P4
Gja-Mir-26-P4
Gmo-Mir-26-P4
Hsa-Mir-26-P4
Laf-Mir-26-P4
Lch-Mir-26-P4
Loc-Mir-26-P4
Mal-Mir-26-P4
Mdo-Mir-26-P4
Mml-Mir-26-P4
Mmr-Mir-26-P4
Mmu-Mir-26-P4
Mun-Mir-26-P4
Neu-Mir-26-P4
Oan-Mir-26-P4
Ocu-Mir-26-P4
Pab-Mir-26-P4
Pbv-Mir-26-P4
Pma-Mir-26-o4
Rno-Mir-26-P4
Sha-Mir-26-P4
Spt-Mir-26-P4
Sto-Mir-26-P4
Tgu-Mir-26-P4
Tni-Mir-26-P4
Xla-Mir-26-P4a
Xla-Mir-26-P4b
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (xenTro9_add) |
chr2: 138750904-138750964 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUGACAUUGGAAGAAAUGGCUGCUGCCUGGUUCAAGUAAUCCAGGAUAGGCUGUUUCCUCAAAGCACGGCCUACUCUUGAUUACUUGUUUCAGGAAGUAGCUCAUGUUACAUCAGCGUCCU
Get precursor sequence
|
Structure | 10 20 30 40 50
UUGACAUUGGAAGAAAU--| G UU C GA GUUUCCU
GGCUGCU CCUGG CAAGUAAUC AG UAGGCU \
UCGAUGA GGACU GUUCAUUAG UC AUCCGG C
UCCUGCGACUACAUUGUAC^ A UU U UC CACGAAA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Xtr-Mir-26-P4_5p |
mirBase accession | MIMAT0003569 |
Sequence |
0- UUCAAGUAAUCCAGGAUAGGCU -22
Get sequence
|
Proposed targets |
TargetScanVert: xtr-miR-26
|
Star sequence |
Xtr-Mir-26-P4_3p* |
mirBase accession | None |
Sequence |
39- CCUACUCUUGAUUACUUGUUUC -61
Get sequence
|