MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-4545-P1-v1

Family name MIR-4545 (all species)
Seed ACAGCAU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-4545
Paralogues Pma-Mir-4545-P1-v2 
Orthologues Ebu-Mir-4545-P1-v1  Ebu-Mir-4545-P1-v2 
Node of Origin (locus) Cyclostomata
Node of Origin (family) Cyclostomata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046071.1: 13966325-13966381 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4545-P1-v1)		 Mir-4545-P1-v1 NC_046071.1: 13966325-13966381 [+] UCSC Ensembl
Mir-4545-P1-v2 NC_046071.1: 13966325-13966381 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCUGGCCCAGCACCUCGCUCCCCGCCGGCCUUCACAACUGGCUGCUUUACUGUAGAGGAAGGGGUACAGCAUCCAGUUGUGUGAGACGGUGGUGGGCUCUCUCUGCAGCUCAAAUU
Get precursor sequence
Structure
        10          20        30         40        50        
CUCUGGCCCAGCACCUC--|   C      GC   -         C    U    GUAGA 
                   GCUC CCGCCG  CUU CACAACUGG UGCU UACU     \
                   CGGG GGUGGC  GAG GUGUUGACC ACGA AUGG     G
UUAAACUCGACGUCUCUCU^   U      A-   U         U    C    GGAAG 
     110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-4545-P1-v1_5p*
mirBase accessionMIMAT0019575
Sequence 
0- CUUCACAACUGGCUGCUUUACU -22
Get sequence
Mature sequence

Pma-Mir-4545-P1-v1_3p
mirBase accessionMIMAT0019576
Sequence 
35- UACAGCAUCCAGUUGUGUGAGA -57
Get sequence