MirGeneDB 3.0
MirGeneDB ID

Pmi-Mir-2008

Family name MIR-2008 (all species)
Seed GUAUUAA
Species Bat starfish (Patiria miniata)
MiRBase ID pmi-mir-2008
Paralogues
Orthologues Pfl-Mir-2008  Sko-Mir-2008-v1  Sko-Mir-2008-v2  Spu-Mir-2008 
Node of Origin (locus) Ambulacraria
Node of Origin (family) Ambulacraria
Genome context
(Pmin1)		 JH769329.1: 20489-20551 [+]
Precursor
(pre-Mir +30nt flank)
ACAGUUACAGUUUUUAUCCAUCUUUUACCCCGUAUUAACACUGCGGCUGAUGAGGGCUGUUAAACCAACCAUCAGCCUCGCUGUCAAUACGAGGUAAGGGCUGACAGACUUCCAAAGCCAAUC
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Structure
        10          20        30        40        50        60 
ACAGUUACAGUUUUUAUC--| U        C      A   C  C        AGGGCUGU 
                    CA CUUUUACC CGUAUU ACA UG GGCUGAUG        \
                    GU GGGAAUGG GCAUAA UGU GC CCGACUAC        U
CUAACCGAAACCUUCAGACA^ C        A      C   C  U        CAACCAAA 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Em To
Mature sequence

Pmi-Mir-2008_5p
mirBase accessionNone
Sequence 
0- CGUAUUAACACUGCGGCUGAUGA -23
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Star sequence

Pmi-Mir-2008_3p*
mirBase accessionMIMAT0032182
Sequence 
40- AUCAGCCUCGCUGUCAAUACGAG -63
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