MirGeneDB 3.0

MirGeneDB ID

Sko-Mir-2008-v1

Family name MIR-2008 (all species)
Seed CAGCCUC
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-2008
Paralogues Sko-Mir-2008-v2 
Orthologues Pfl-Mir-2008  Pmi-Mir-2008  Spu-Mir-2008 
Node of Origin (locus) Ambulacraria
Node of Origin (family) Ambulacraria
Genome context
(Skow_1.1)
NW_003125393.1: 116441-116501 [-]
Clustered miRNAs
(< 50kb from Mir-2008-v1)
Mir-2008-v1 NW_003125393.1: 116441-116501 [-]
Mir-2008-v2 NW_003125393.1: 116442-116500 [-]
Precursor
(pre-Mir +30nt flank)
UCACGUGUUCUGCUUCUUCAUCUUUUACUCCGUAUUAACACUGAGGUUGAUGUUCGCAGUAACUAACCAUCAGCCUCGCUGUCAAUACGGCGUAACUGAUGGUAGUCAUCACGCAGACCAU
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Structure
        10          20        30        40        50          
UCACGUGUUCUGCUUCU--|    UU    U       A   C           UUCGCAG 
                   UCAUC  UUAC CCGUAUU ACA UGAGGUUGAUG       \
                   GGUAG  AAUG GGCAUAA UGU GCUCCGACUAC       U
UACCAGACGCACUACUGAU^    UC    C       C   C           CAAUCAA 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Sko-Mir-2008-v1_5p*

mirBase accessionNone
Sequence
0- CGUAUUAACACUGAGGUUGAUG -22
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Mature sequence

Sko-Mir-2008-v1_3p

mirBase accessionMIMAT0009738
Sequence
39- UCAGCCUCGCUGUCAAUACGGC -61
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