| MirGeneDB ID | Spu-Mir-2008 |
|---|
| Family name |
MIR-2008 (all species) |
|---|
| Seed |
UAUUAAC |
|---|
| Species |
Purple sea urchin (Strongylocentrotus purpuratus) |
|---|
| MiRBase ID |
spu-mir-2008
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Pfl-Mir-2008
Pmi-Mir-2008
Sko-Mir-2008-v1
Sko-Mir-2008-v2
|
|---|
| Node of Origin (locus) |
Ambulacraria
|
|---|
| Node of Origin (family) |
Ambulacraria
|
|---|
Genome context
(Spur_5.0) |
AAGJ06000010.1: 6802287-6802345 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CGAGGUAGCAUAUUCUCCACUUUUUACCCCGUAUUAACAAUGUGGCUGAUGAGGAAUCUUAUGAACCAUCAGCCUCGCUGUCAAUACGAGGUAAGGAGUGACAACCAACCAAUCAACGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CGAGGUAGCAUAUUCUC--| C A A U AGGAAUC
CACUUUUUACC CGUAUU ACA UG GGCUGAUG \
GUGAGGAAUGG GCAUAA UGU GC CCGACUAC U
AGCAACUAACCAACCAACA^ A C C U CAAGUAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Spu-Mir-2008_5p |
| mirBase accession | None |
|---|
| Sequence |
0- GUAUUAACAAUGUGGCUGAUGA -22
Get sequence
|
|---|
| Star sequence |
Spu-Mir-2008_3p* |
| mirBase accession | MIMAT0009749 |
|---|
| Sequence |
37- AUCAGCCUCGCUGUCAAUACGA -59
Get sequence
|
|---|
