MirGeneDB 3.0

MirGeneDB ID

Pmi-Mir-2012

Family name MIR-2012 (all species)
Seed AGUACUG
Species Bat starfish (Patiria miniata)
MiRBase ID pmi-mir-2012
Paralogues
Orthologues Pfl-Mir-2012  Sko-Mir-2012  Spu-Mir-2012 
Node of Origin (locus) Ambulacraria
Node of Origin (family) Ambulacraria
Genome context
(Pmin1)
JH772886.1: 37288-37347 [+]
Precursor
(pre-Mir +30nt flank)
UAUUGCUCCUUCUUCCUUCCCUUCCCUAGUUAGUACUGGCAUAUGGACAUUCGUGUGACAUGGAACCAAUGUUCAGAUGCCCGUACUGUCUGGUGUUGGGUAUGCUCACACUGCUAAGCU
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Structure
        10          20        30        40        50         
UAUUGCUCCUUCUUCCUU--|  UUCC    U      U     A        CGUGUGA 
                    CCC    CUAG UAGUAC GGCAU UGGACAUU       C
                    GGG    GGUC GUCAUG CCGUA ACUUGUAA       A
UCGAAUCGUCACACUCGUAU^  UUGU    U      C     G        CCAAGGU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
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Mature sequence

Pmi-Mir-2012_5p

mirBase accessionMIMAT0032187
Sequence
0- UAGUACUGGCAUAUGGACAUUC -22
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Star sequence

Pmi-Mir-2012_3p*

mirBase accessionNone
Sequence
38- AUGUUCAGAUGCCCGUACUGUC -60
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