MirGeneDB ID | Pmi-Mir-2012 |
Family name |
MIR-2012 (all species) |
Seed |
AGUACUG |
Species |
Bat starfish (Patiria miniata) |
MiRBase ID |
pmi-mir-2012
|
Paralogues |
|
Orthologues |
Pfl-Mir-2012
Sko-Mir-2012
Spu-Mir-2012
|
Node of Origin (locus) |
Ambulacraria
|
Node of Origin (family) |
Ambulacraria
|
Genome context (Pmin1) |
JH772886.1: 37288-37347 [+]
|
Precursor (pre-Mir +30nt flank) |
UAUUGCUCCUUCUUCCUUCCCUUCCCUAGUUAGUACUGGCAUAUGGACAUUCGUGUGACAUGGAACCAAUGUUCAGAUGCCCGUACUGUCUGGUGUUGGGUAUGCUCACACUGCUAAGCU
Get precursor sequence
|
Structure | 10 20 30 40 50
UAUUGCUCCUUCUUCCUU--| UUCC U U A CGUGUGA
CCC CUAG UAGUAC GGCAU UGGACAUU C
GGG GGUC GUCAUG CCGUA ACUUGUAA A
UCGAAUCGUCACACUCGUAU^ UUGU U C G CCAAGGU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Mature sequence |
Pmi-Mir-2012_5p |
mirBase accession | MIMAT0032187 |
Sequence |
0- UAGUACUGGCAUAUGGACAUUC -22
Get sequence
|
Star sequence |
Pmi-Mir-2012_3p* |
mirBase accession | None |
Sequence |
38- AUGUUCAGAUGCCCGUACUGUC -60
Get sequence
|