| MirGeneDB ID | Spu-Mir-2012 |
|---|
| Family name |
MIR-2012 (all species) |
|---|
| Seed |
AGUACUG |
|---|
| Species |
Purple sea urchin (Strongylocentrotus purpuratus) |
|---|
| MiRBase ID |
spu-mir-2012
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Pfl-Mir-2012
Pmi-Mir-2012
Sko-Mir-2012
|
|---|
| Node of Origin (locus) |
Ambulacraria
|
|---|
| Node of Origin (family) |
Ambulacraria
|
|---|
Genome context
(Spur_5.0) |
AAGJ06000018.1: 2474077-2474140 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GACGAACGGGACACAUUGCUGGGUUCUUGAUAGUACUGGCAUAUGGACAUUGUUGUAAUAAUCUUACUCUCAAUGUUCAUCUGUCCGUACUGCCAAGUGCCUGGCCUUACAUUCAUUCAUCCGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GACGAACGGGACACAUU--| UG U A U U UUGUAAUA
GC GGU CUUG UAGUAC GGCA AUGGACAUUG A
CG CCG GAAC GUCAUG CUGU UACUUGUAAC U
CGCCUACUUACUUACAUUC^ GU U C C C UCUCAUUC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Spu-Mir-2012_5p |
| mirBase accession | MIMAT0009741 |
|---|
| Sequence |
0- UAGUACUGGCAUAUGGACAUUG -22
Get sequence
|
|---|
| Star sequence |
Spu-Mir-2012_3p* |
| mirBase accession | None |
|---|
| Sequence |
42- AUGUUCAUCUGUCCGUACUGCC -64
Get sequence
|
|---|
