MirGeneDB ID | Pfl-Mir-2012 |
Family name |
MIR-2012 (all species) |
Seed |
AGUACUG |
Species |
Ptychodera (Ptychodera flava) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Pmi-Mir-2012
Sko-Mir-2012
Spu-Mir-2012
|
Node of Origin (locus) |
Ambulacraria
|
Node of Origin (family) |
Ambulacraria
|
Genome context (Pfl) |
LD344014.1: 121392-121453 [+]
|
Precursor (pre-Mir +30nt flank) |
AGCCACGAUUAUCAUUUAUAUCUUACCCAGUAGUACUGGCAUAUGGACAUUGGUAUGCAUUGAAACCCCAGUGUUCAUAUUCCAGUACAGCCAGGUGAGGUAUCAUAAGCGCACACAUCCAG
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|
Structure | 10 20 30 40 50 60
AGCCACGAUUAUCAUUU--| CA A C GUAUGCA
AUAUCUUACC GU GUACUGG AUAUGGACAUUG U
UAUGGAGUGG CG CAUGACC UAUACUUGUGAC U
GACCUACACACGCGAAUAC^ AC A U CCCAAAG
120 110 100 90 80 70 |
Deep sequencing |
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|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Pfl-Mir-2012_5p |
mirBase accession | None |
Sequence |
0- UAGUACUGGCAUAUGGACAUUG -22
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|
Star sequence |
Pfl-Mir-2012_3p* (predicted) |
mirBase accession | None |
Sequence |
40- GUGUUCAUAUUCCAGUACAGCC -62
Get sequence
|