MirGeneDB ID | Sko-Mir-2012 |
Family name |
MIR-2012 (all species) |
Seed |
AGUACUG |
Species |
Saccoglossus (Saccoglossus kowalevskii) |
MiRBase ID |
sko-mir-2012
|
Paralogues |
|
Orthologues |
Pfl-Mir-2012
Pmi-Mir-2012
Spu-Mir-2012
|
Node of Origin (locus) |
Ambulacraria
|
Node of Origin (family) |
Ambulacraria
|
Genome context (Skow_1.1) |
NW_003142305.1: 444456-444512 [+]
|
Precursor (pre-Mir +30nt flank) |
UGACAGCAAGUAGUCGGGCAUAUUACUUGGUAGUACUGGCAUAUGGACAUUGGUGAUUUAACUCAAUGUUCAUAUUUCAGUAUUUCCAAGUGAGAUGCAUUUUGCAGUCGAAGUCAU
Get precursor sequence
|
Structure | 10 20 30 40 50
UGACAGCAAGUAGUCGG-- A U C -|UGA
GCAU UUACUUGG AGUACUGG AUAUGGACAUUG G U
CGUA AGUGAACC UUAUGACU UAUACUUGUAAC C U
UACUGAAGCUGACGUUUUA G U U U^AAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Sko-Mir-2012_5p |
mirBase accession | MIMAT0009736 |
Sequence |
0- UAGUACUGGCAUAUGGACAUUGG -23
Get sequence
|
Star sequence |
Sko-Mir-2012_3p* |
mirBase accession | MIMAT0019164 |
Sequence |
34- AAUGUUCAUAUUUCAGUAUUUCC -57
Get sequence
|