MirGeneDB 3.0

MirGeneDB ID

Sko-Mir-2012

Family name MIR-2012 (all species)
Seed AGUACUG
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-2012
Paralogues
Orthologues Pfl-Mir-2012  Pmi-Mir-2012  Spu-Mir-2012 
Node of Origin (locus) Ambulacraria
Node of Origin (family) Ambulacraria
Genome context
(Skow_1.1)
NW_003142305.1: 444456-444512 [+]
Precursor
(pre-Mir +30nt flank)
UGACAGCAAGUAGUCGGGCAUAUUACUUGGUAGUACUGGCAUAUGGACAUUGGUGAUUUAACUCAAUGUUCAUAUUUCAGUAUUUCCAAGUGAGAUGCAUUUUGCAGUCGAAGUCAU
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Structure
        10          20        30        40        50        
UGACAGCAAGUAGUCGG--    A        U        C            -|UGA 
                   GCAU UUACUUGG AGUACUGG AUAUGGACAUUG G   U
                   CGUA AGUGAACC UUAUGACU UAUACUUGUAAC C   U
UACUGAAGCUGACGUUUUA    G        U        U            U^AAU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Sko-Mir-2012_5p

mirBase accessionMIMAT0009736
Sequence
0- UAGUACUGGCAUAUGGACAUUGG -23
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Star sequence

Sko-Mir-2012_3p*

mirBase accessionMIMAT0019164
Sequence
34- AAUGUUCAUAUUUCAGUAUUUCC -57
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